NIH | National Cancer Institute | NCI Wiki  

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

You have Java and Ant installed, as listed below Wiki Markup{

Advanced Tables - Table Plus

...

Required

...

Software

...

Name

...


Version
URL to Download

Description

JDK 1.5.X

...

(currently

...

using

...

1.5.14)

...

...

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include

The J2SE Develop¬ment Kit (JDK)

...

supports

...

creat¬ing

...

J2SE

...

applications.

...

JBOSS

...

Application

...

Server

...

(4.0.X)

...

...

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include

JBoss Application server is the Java application Server

Apache Ant, 1.7.0

...

...

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include

Apache Ant is a Java-based

...

build

...

tool.

...

R and Rserve have been installed. Please see the Rserve homepage at:
http://stats.math.uni-augsburg.de/Rserve/

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include

And the Rserve installation instructions:
http://stats.math.uni-augsburg.de/Rserve/doc.shtml

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include

It is recommended that you read the Rserve installation instructions before installing R. Specifically, the Rserve instructions recommend building the R distribution from source using the (color:red)--enable-R-shlib flag(color).

The R source distribution can be obtained from R project site:
http://www.r-project.org/

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include
(click the link under download)

...

Download the latest client jar file (use the exceptions version) from:
http://stats.math.uni-augsburg.de/Rserve/down.shtml

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include
after agreeing to their licensing terms and conditions.
Copy the downloaded file into the lib directory under the analysis server install directory and rename it to Rserve.jar .

...

Steps to add a Data File

Step 1

Click on this link https://gforge.nci.nih.gov/frs/?group_id=406 and you will find The caIntegrator-ODI GForge project files page has data files for particular application
For example:
Rembrandt:
Rembrandt_mas5.dataMatrix_275_10-15-07.Rda
Rembrandt_UnifiedGene.dataMatrix_275_10-15-07.Rda
Ispy:
newDataFile.zip

...

And modify it by adding a new line for each developer using this file as an example

3) Copy & and rename analysisServerDeveloper1.properties to local/content/caintegrator/bin/

...