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Question: Which file can be parsed into caArray? What is the benefit of file parsing?
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File Types | Imported after validation and parsing | Imported without validation and parsing |
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Raw/processed data files; |
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Array Design files; | For information about array design file types, see the table in Managing Array Designs. |
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MAGE-TAB files; |
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Supplemental Files | These cannot be validated nor imported. Files of unknown file type or simply reference files fall under this category. For more information, see #Supplemental Files. |
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For the data that are parsed into caArray, an analytical service (like geWorkbench) can pull the data out using the programmatic API and perform analysis on it or plot graphs from it etc. Another example is web Genome, a caArray client, which pulls parsed data from caArray experiments and plots log ratio values against the chromosome location. With parsed data, a client can ask for quantitative types (columns) of data of interest, instead of having to retrieve the entire contents of the data file.
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Please leave your comment in the caArray End User Forum.
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