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Panel

title	Document Information

Author: Craig Stancl, Scott Bauer, Cory Endle
Email: Stancl.craig@mayo.edu, bauer.scott@mayo.edu, endle.cory@mayo.edu
Team: LexEVS
Contract: S13-500 MOD4
Client: NCI CBIIT
National Institutes of Heath
US Department of Health and Human Services

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December Face-to-Face (December 8 - 10, 2015)

Meeting Details

NCI Shady Grove Campus
9609 Medical Center Drive
Rockville, MD 20850
http://www.cancer.gov/about-nci/visit

Rooms:

Day 1 (8-1): 08-Dec-2015 08:00 AM - 01:00 PM 1W030
Day 1 (1-5): 08-Dec-2015 01:00 PM - 05:00 PM 4W030

Day 2 : 09-Dec-2015 08:00 AM - 05:00 PM 2E914

Day 3 (8-12): 10-Dec-2015 08:00 AM - 12:00 PM 6E030
Day 3 (12-5): 10-Dec-2015 12:00 PM - 05:00 PM 1W030

Conference Details
1-866-660-5416 # 2398515

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WebEx by Day:

Topic: Mayo-NCI EVS F2F Day 1 (Monday)
Date and Time:
Tuesday, December 8, 2015 8:00 am, Eastern Standard Time (New York, GMT-05:00)
Event number: 315 782 024
Event password: 4NCI-new
Panelist password: The Event has no Panelist Password
Host key: 317579 (Use this to reclaim host privileges.)
Event address for attendees: https://cbiit.webex.com/cbiit/onstage/g.php?d=315782024&t=a
Event address for panelists: https://cbiit.webex.com/cbiit/onstage/g.php?d=315782024&t=p

Topic: Mayo-NCI EVS F2F Day 2 (Tuesday)
Date and Time:
Wednesday, December 9, 2015 8:00 am, Eastern Standard Time (New York, GMT-05:00)
Event number: 318 104 865
Event password: 4NCI-new
Panelist password: The Event has no Panelist Password
Host key: 149718 (Use this to reclaim host privileges.)
Event address for attendees: https://cbiit.webex.com/cbiit/onstage/g.php?d=318104865&t=a
Event address for panelists: https://cbiit.webex.com/cbiit/onstage/g.php?d=318104865&t=p

Topic: Mayo-NCI EVS F2F Day 3 (Wednesday)
Date and Time:
Thursday, December 10, 2015 8:00 am, Eastern Standard Time (New York, GMT-05:00)
Event number: 313 684 532
Event password: 4NCI-new
Panelist password: The Event has no Panelist Password
Host key: 914157 (Use this to reclaim host privileges.)
Event address for attendees: https://cbiit.webex.com/cbiit/onstage/g.php?d=313684532&t=a
Event address for panelists: https://cbiit.webex.com/cbiit/onstage/g.php?d=313684532&t=p

Attendees

Name	Role	Attend? (Y/N)
Wright, Larry	NIH/NCI	Y
Fragoso, Gilberto	NIH/NCI	Y
De Coronado, Sherri	NIH/NCI	Y
Safran, Tracy	NIH/NCI	Y
Ong, Kim L	IS	Y
Lucas, Jason R	IS	Y
Bauer, Scott	Mayo	Y
Stancl, Craig	Mayo	Y
Endle, Cory	Mayo	Y
Wynne, Robert	NIH/NCI	Y
Tran, Tin	NIH/NCI [C]	Y
Carlsen, Brian	(NIH/NCI) [C]
Wong, Joanne
Kuntipuram, Kumar

Meeting Notes

2015.12 Technical Face-To-Face Meeting Notes

2015.12 Technical Face-To-Face Prioritization List

Agenda

Notes

		Tuesday, December 8
Time	Location	Topics	Participants	NotesResources
9:00 AM - 9:30 AM	1W030	Overview and Planning
9:30 AM - Noon	1W030	Discussion: Tech Stack Updates Migration to Java 8 Migration to centOS 7 Migration to Spring 4 Determine next steps/roadmap		2015.12 - NCI F2F - Tech Stack.pptx
		Discussion: LEXEVS API/Browser Performance and Usability Improvements NCI to provide requirements/use cases Areas for discussion: value set mapping multi-namespace relationship querying inferred data Discuss the removal of caCORE and refactor Remote API Determine next steps/roadmap		2015.12 - NCI F2F - LEXEVS API:Browser Performance and Usability Improvements.pptx
Noon - 1:00 PM		Lunch	All
1:00 PM - 2:00 PM	4W030	Discussion: Enhancing the LEXEVS CTS2 REST Interface NCI to provide requirements/use cases Areas for discussion: Expanding to include Associations Specialized REST calls (e.g., bulk download) to CTS2 service framework Provide the capability to use data from one endpoint to query another Provide a framework that includes both CTS2 and Extensions Bulk downloads/special user requirements Determine next steps/roadmap		2015.12 - NCI F2F - CTS2 API Notes.pptx
2:00 PM - 4:00 PM	4W030	Information Session: End User Usage of Using LexEVS Query API and CTS2 API Overview to demonstrate how to query using LexEVS APIAPIs Review of existing LexEVS API documentation Open discussion - specific usecasesuse cases		2015.12 - NCI F2F - Using LexEVS Query API and CTS2 API .pptx
4:00 PM - 5:00 PM	4W030	Overflow/Additional Topics
		Wednesday, December 9
Time	Location	Topics	Participants		Resources
8:00 AM - 9:00 AM	2E914	Discussion: Review Lucene	Kim Ong Scott Bauer
9:00 AM - 9:30 AM	2E914	Recap and Planning
9:30AM - Noon	2E914	Discussion: Coding Scheme Search and Indexing Determine requirements/usecases use cases for horizontal coding scheme searches Overview of indexing of qualifiers Overview of search results in 6.4		2015.12 - NCI F2F - Coding Scheme Search and Indexing.pptx
		Discussion: LEXEVS Loader Improvements Discuss known issues for OWL2, MeDRA MedDRA and HL7 Loaders Other loader improvements Determine next steps/roadmap		2015.12 - NCI F2F - LexEVS Loader Improvements.pptx
Noon - 1:00 PM		Lunch	All
1:00 PM - 1:30 PM	2E914	EVS Tools (LexEVS & EVS Focus) Meeting Open topics
1:30 PM - 4:00 PM	2E914	Tutorial/Discussion: Loader Implementation and Requirements Overview of LexEVS Loader development process Implement a simple LexEVS loader (hands-on) Discussion of entry points into various loaders for purposes of updating Discuss automating data loads and customization Review existing loaders and identify where changes could be made	Tracy Rob Kim	2015.12 - NCI F2F - Loader Tutorial.pptx 2015.12 - NCI F2F - Tutorial Env Set Up.pptx
4:00 PM - 5:00 PM	2E914	Overflow/Additional Topics
		Thursday, December 10
Time	Location	Topics	Participants	NotesResources
9:00 AM - 9:30 AM	6E030	Recap and Planning
9:30 AM - Noon	6E030	Discussion: Triple Store/Graph Database NCI to provide requirements/use cases Discuss plans based on Triple Store Capability Research and Analysis wiki pages Demo of ArangoDB (https://www.arangodb.com/) Determine next steps/roadmap		2015.12 - NCI F2F - Triple Store:Graph Database.pptx
		Discussion: Cloud Considerations NCI to provide requirements/use cases for supporting a cloud environment		2015.12 - NCI F2F - Cloud Considerations.pptx
		Discussion: Build and Deployment Process DevOps and continuous integration Changes for build, deployment and distribution Changes to support 6.4 Considerations for Triple Store/Graph DB Considerations for Cloud Infrastructure Mayo's continuous integration server Demo of Docker Determine next steps/roadmap		2015.12 - NCI F2F - Build and Deployment Process.pptx
Noon - 1:00 PM		Lunch	All
1:00 PM - 3:00 PM	1W030	Discussion: Value Set Editor (Authoring) NCI to provide requirements/use cases		2015.12 - NCI F2F - Value Set Editor.pptx
		Discussion: The Future of lbGUI Discuss future requirements Review issues - JIRA and others Develop a roadmap to address technical debt Determine next steps/roadmap		2015.12 - NCI F2F - lbGUI.pptx
3:00 PM - 5:00 PM	1W030	Debrief Prioritize Determine next steps/roadmap

Topics

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Do we need to coordinate LexEVS and tools updates?
Are there updates other than Java 8 to plan now?
Need to invite Jacob to tech stack related meetings.
Discuss update potentially updating Spring to version 4.

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Discuss a REST Framework that includes CTS2 and other calls (extensions)
CTS2 REST vs additional (extensions) REST calls like bulk download

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Issues with OWL2, MeDRA and HL7.
Tutorial/education on creating and using loaders.

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https://wiki.nci.nih.gov/display/EVS/Triple+Store+Capability+Research+and+Analysis

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Horizontal Coding Scheme searches

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Optional Tasks (from SOW, for reference):

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- LEXEVS API Performance and Usability Improvements

LEXEVS API performance and usability will be a major focus area for this effort. EVS and other users have hit a number of bugs and missing features that significantly affect the usability of the APIs, with special effort needed to improve value set, mapping, multi-namespace support as well as querying of relationship and inferred data.

Active LEXEVS support in all indicated areas is important to the quality and efficiency of ongoing EVS operations and services, and to the growing community of LEXEVS adopters for whom it provides a shared conceptual and technical terminology model supporting community standards and interoperability.

- LEXEVS Loader Improvements

The subcontractor shall address LEXEVS Loader Improvements. The LEXEVS Loaders are a set of Java programs and configuration files that transform and load terminology data from the various file formats and source terminology data structures into the unified LEXEVS server data model. They are crucial to data access and quality, and a top priority for the current effort. Key areas of effort are improving and extending loaders to better handle current and new sources and formats, and improved documentation and error handling.

- Enhancing the LEXEVS CTS2 REST Interface

The subcontractor shall address improvements to the CTS2 REST API and related resources. The previously existing REST API was created as a prototype to prove that such an interface will have value. It succeeded in that task. Unfortunately, that older API is tied very closely to the underlying structure of the data rather than being tied to the usage of the data. This effort will extend the new CTS2 API, tools and documentation to fill gaps in coverage of the CTS2 REST specification and focus on the user of the API, providing them with a clean, complete API that is easier to use than the current heavyweight solution.

- Cloud Support

The subcontractor will address the deployment, customization and maintenance of cloud-based LEXEVS services in order to address the challenges associated with the growth of biomedical research data, and the computational limitations currently experienced by biomedical researchers.

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