Page History
Scrollbar | ||
---|---|---|
|
...
Page info | ||||
---|---|---|---|---|
|
Section | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
LexEVS 6.0 Examples
Differences from the 5.0 examples include:
...
|
LexEVS Data Services to be discontinued.
The caCORE type REST queries will be discontinued with the LexEVS 6.5 release. The CTS2 will replace the previous REST services. Please replace your old queries with the listed examples.
...
Get CodingScheme details
Note | ||
---|---|---|
| ||
This query may not work if the coding scheme in the query is not tagged as the "PRODUCTION" coding scheme. |
...
If a version is not included then LexEVS will look for a version tagged as "PRODUCTION". If no such coding scheme exists then an error will be returned. |
Code Block | ||
---|---|---|
| ||
https://lexevsapi6.nci.nih.gov/ |
...
lexevsapi64/ |
...
GetXML?query=org.LexGrid.codingSchemes.CodingScheme&org.LexGrid.codingSchemes.CodingScheme&codingSchemeName=Zebrafish |
Code Block | ||
---|---|---|
| ||
httpshttp://lexevsapi60lexevscts2.nci.nih.gov/lexevsapi60lexevscts2/GetHTMLcodesystemversions?query=org.LexGrid.codingSchemes.CodingScheme&org.LexGrid.codingSchemes.CodingScheme&codingSchemeName=Zebrafishmatchvalue=Zebrafish&format=xml |
Note that you could also add a version to a URL targeting a specific load in LexEVS. The following non-working example show shows the form to target the 1.2November_June24_14_2010 2016 version of the Zebrafish terminology.
Code Block | ||
---|---|---|
| ||
httpshttp://lexevsapi60lexevsapi6.nci.nih.gov/lexevsapi60lexevsapi64/GetHTMLGetXML?query=org.LexGrid.codingSchemes.CodingScheme&org.LexGrid.codingSchemes.CodingScheme&codingSchemeName=Zebrafish&codingSchemeVersion=1.2November_June_14_2010 |
Get Concept by Code
...
24_2016 |
Code Block | ||
---|---|---|
| ||
https:// |
...
lexevscts2.nci.nih.gov |
...
/lexevscts2/codesystem/Zebrafish/version/November_24_2016?format=xml |
The information can also be returned as JSON.
Code Block | ||
---|---|---|
| ||
https://lexevscts2 | ||
Code Block | ||
http://lexevsapi60.nci.nih.gov/lexevscts2/lexevsapi60/GetHTML?query=org.LexGrid.concepts.Entity&org.LexGrid.concepts.Entity[@_entityCode=ZFA:0001234]&codingSchemeName=Zebrafish |
Get Concept by Code with wildcard
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=org.LexGrid.concepts.Entity&org.LexGrid.concepts.Entity\[@_entityCode=ZFA:000123*\]&codingSchemeName=Zebrafish
codesystem/NCI_Thesaurus/version/17.01e?format=json |
The GetHTML function is not supported in CTS2
Code Block | ||
---|---|---|
| ||
https://lexevsapi6 | ||
Code Block | ||
http://lexevsapi60.nci.nih.gov/lexevsapi60lexevsapi64/GetHTML?query=org.LexGrid.conceptscodingSchemes.EntityCodingScheme&org.LexGrid.concepts.Entity[@_entityCode=ZFA:000123*]codingSchemes.CodingScheme&codingSchemeName=Zebrafish |
Get Concept by Code
...
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=org.LexGrid.concepts.Entity,org.LexGrid.commonTypes.EntityDescription&org.LexGrid.commonTypes.EntityDescription\[@_content=heart\]&codingSchemeName=Zebrafish
Code Block | ||
---|---|---|
| ||
Code Block | ||
|
...
| |
http:// |
...
lexevsapi6.nci.nih.gov/ |
...
lexevsapi64/ |
...
GetXML?query=org.LexGrid.concepts.Entity |
...
& |
...
Code Block |
---|
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=org.LexGrid.concepts.Entity,org.LexGrid.commonTypes.EntityDescription&org.LexGrid.commonTypes.EntityDescription[@_content=he*rt*entityCode=C33999]&codingSchemeName=Zebrafish |
Get Concept by Presentation
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=Concept,Presentation,Text&Text\[@_content=heart\]&codingSchemeName=Zebrafish
Code Block |
---|
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=Concept,Presentation,Text&Text[@_content=heart]&codingSchemeName=Zebrafish |
Get Concept by Presentation with wildcard
...
NCI_Thesaurus |
Code Block | ||
---|---|---|
| ||
https://lexevscts2.nci.nih.gov/ |
...
Code Block |
---|
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=Concept,Presentation,Text&Text[@_content=heart*]&codingSchemeName=Zebrafishlexevscts2/codesystem/NCI_Thesaurus/entity/C33999 |
Get Concept by
...
Code with wildcard
...
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=Concept,Definition,Text&Text\[@_content=Bilateral%20groups%20of%20cells*\]&codingSchemeName=Zebrafish
Code Block |
---|
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=Concept,Definition,Text&Text[@_content=Bilateral%20groups%20of%20cells*]&codingSchemeName=Zebrafish |
Show Presentations of a Concept
- Not supported
Searching by code with wildcard is not supported in CTS2http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=org.LexGrid.concepts.Presentation&org.LexGrid.concepts.Entity\[@_entityCode=ZFA:0001234\]&roleName=_presentationList&codingSchemeName=Zebrafish
Code Block |
---|
http://lexevsapi60lexevsapi6.nci.nih.gov/lexevsapi60lexevsapi64/GetHTMLGetXML?query=org.LexGrid.concepts.Presentation&org.LexGrid.concepts.Entity[@_entityCode=ZFA:0001234]&roleName=_presentationList&codingSchemeName=Zebrafish |
Show Definitions of a Concept
...
&org.LexGrid.concepts.Entity |
...
[@_entityCode=ZFA: |
...
000123*]& |
...
codingSchemeName=Zebrafish |
Code Block |
---|
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=org.LexGrid.concepts.Definition&org.LexGrid.concepts.Entity[@_entityCode=ZFA:0001234]&roleName=_definitionList&codingSchemeName=Zebrafish |
Show Supported Associations for a CodingScheme
Code Block |
---|
http://lexevsapi60.nci.nih.gov/lexevsapi60/GetHTML?query=org.LexGrid.naming.SupportedAssociation&org.LexGrid.naming.SupportedAssociation&codingSchemeName=Zebrafish |
LexEVS 5.0 Examples
Get CodingScheme details
Code Block |
---|
http://lexevsapi.nci.nih.gov/lexevsapi50/GetHTML?query=org.LexGrid.codingSchemes.CodingScheme&org.LexGrid.codingSchemes.CodingScheme&codingSchemeName=Zebrafish |
Note that you could also add a version to a URL targeting a specific load in LexEVS. For example, you might use this if you wanted to target the 1.2_June_14_2010 version of the Zebrafish terminology.
Code Block |
---|
http://lexevsapi.nci.nih.gov/lexevsapi50/GetHTML?query=org.LexGrid.codingSchemes.CodingScheme&org.LexGrid.codingSchemes.CodingScheme&codingSchemeName=Zebrafish&codingSchemeVersion=1.2_June_14_2010 |
Get Concept by Code
...
Search for Concept by EntityDescription - Not fully supported
The old DataServices performed a strict exact match. This query will return only one result. It also specifies to only search the EntityDescription.
Code Block | ||
---|---|---|
| ||
http://lexevsapi6.nci.nih.gov/ |
...
lexevsapi64/ |
...
GetXML?query=org.LexGrid.concepts. |
...
Entity,org.LexGrid. |
...
Code Block |
---|
http://lexevsapi.nci.nih.gov/lexevsapi50/GetHTML?query=org.LexGrid.concepts.ConceptcommonTypes.EntityDescription&org.LexGrid.conceptscommonTypes.ConceptEntityDescription[@_entityCodecontent=ZFA:0001234Heart]&codingSchemeName=Zebrafish |
Get Concept by Code with wildcard
http://lexevsapi.nci.nih.gov/lexevsapi50/GetHTML?query=org.LexGrid.concepts.Concept&org.LexGrid.concepts.Concept\[@_entityCode=ZFA:000123*\]&codingSchemeName=Zebrafish
Code Block |
---|
http://lexevsapi.nci.nih.gov/lexevsapi50/GetHTML?query=org.LexGrid.concepts.Concept&org.LexGrid.concepts.Concept[@_entityCode=ZFA:000123*]&codingSchemeName=Zebrafish |
Get Concept by Code by EntityDescription
...
NCI_Thesaurus |
CTS2 does a tokenized exact match. A concept where any one token is an exact match will be included in the result set. As a result, this returns multiple concepts. In addition, CTS2 does not support specifying what value to search, so looks at all presentation properties, not just the EntityDescription.
Code Block | ||
---|---|---|
| ||
http://lexevscts2.nci.nih.gov/ |
...
Code Block |
---|
http://lexevsapi.nci.nih.gov/lexevsapi50/GetHTML?query=org.LexGrid.concepts.Concept,org.LexGrid.commonTypes.EntityDescription&org.LexGrid.commonTypes.EntityDescription[@_content=heart]&codingSchemeName=Zebrafish |
Get Concept by Code by EntityDescription with wildcard
...
lexevscts2/codesystem/NCI_Thesaurus/entities?matchvalue=Heart&matchalgorithm=exactMatch?format=xml |
Search for Concept with wildcard
Code Block |
---|
https://lexevsapi6.nci.nih.gov/ |
...
lexevsapi64/ |
...
GetXML?query=org.LexGrid.concepts. |
...
Entity,org.LexGrid.commonTypes.EntityDescription&org.LexGrid.commonTypes.EntityDescription |
...
[@_content= |
...
He*rt* |
...
]&codingSchemeName=NCI_Thesaurus |
In CTS2 the match algorithm must be specified as luceneQuery in order to use wildcards.Zebrafish
Code Block |
---|
httphttps://lexevsapilexevscts2.nci.nih.gov/lexevsapi50/GetHTML?query=org.LexGrid.concepts.Concept,org.LexGrid.commonTypes.EntityDescription&org.LexGrid.commonTypes.EntityDescription[@_content=he*rt*]&codingSchemeName=Zebrafish |
...
/lexevscts2/codesystem/NCI_Thesaurus/entities?matchalgorithm=luceneQuery&format=xml&matchvalue=He*rt |
Search for Concept by Presentation - Not fully supported
Code Block | ||
---|---|---|
| ||
http:// |
...
lexevsapi6.nci.nih.gov/ |
...
lexevsapi64/GetHTML?query=Concept,Presentation,Text&Text |
...
[@_content=heart |
...
]&codingSchemeName=Zebrafish |
CTS2 by default searches all presentation properties, so this use case is coincidentally supported. However CTS2 does not allow the user to specifically choose what is searched.
Code Block | ||
---|---|---|
| ||
http://lexevsapilexevscts2.nci.nih.gov/lexevsapi50/GetHTML?query=Concept,Presentation,Text&Text[@_content=heart]&codingSchemeName=Zebrafish |
...
/lexevscts2/codesystem/NCI_Thesaurus/entities?matchvalue=Heart&matchalgorithm=exactMatch?format=xml |
Search for Concept by Presentation with wildcard - Not fully supported
http://lexevsapilexevsapi60.nci.nih.gov/lexevsapi50lexevsapi60/GetHTML?query=Concept,Presentation,Text&Text\[@_content=heart*\]&codingSchemeName=ZebrafisZebrafish
Code Block |
---|
http://lexevsapilexevsapi6.nci.nih.gov/lexevsapi50lexevsapi64/GetHTML?query=Concept,Presentation,Text&Text[@_content=heart*]&codingSchemeName=Zebrafish |
Get Concept by Definition with wildcard
...
As above, the user cannot specify that only Presentation properties should be searched, but this is the default.
Code Block |
---|
https:// |
...
lexevscts2.nci.nih.gov/lexevscts2/codesystem/NCI_Thesaurus/entities?matchalgorithm=luceneQuery&format=xml&matchvalue=He*rt |
Get Concept by Definition with wildcard - Not supported/lexevsapi50/GetHTML?query=Concept,Definition,Text&Text\[@_content=Bilateral%20groups%20of%20cells*\]&codingSchemeName=Zebrafish
Code Block |
---|
http://lexevsapilexevsapi6.nci.nih.gov/lexevsapi50lexevsapi64/GetHTMLGetXML?query=Concept,Definition,Text&Text[@_content=Bilateral%20groups%20of%20cells*]&codingSchemeName=Zebrafish |
Show Presentations of a Concept - Not fully supported
Code Block |
---|
http:// |
...
lexevsapi6.nci.nih.gov/ |
...
lexevsapi64/ |
...
GetXML?query=org.LexGrid.concepts.Presentation&org.LexGrid.concepts. |
...
Entity[@_entityCode=ZFA:0001234 |
...
]&roleName=_presentationList&codingSchemeName=Zebrafish |
Code Block |
---|
CTS2 does not permit the user to specify what properties should be returned by a search. The Presentations will be returned within the body of results from an entity query.
Show Definitions of a Concept - Not fully supported
Code Block |
---|
http:// |
...
lexevsapi6.nci.nih.gov/ |
...
lexevsapi64/ |
...
GetXML?query=org.LexGrid.concepts.Definition&org.LexGrid.concepts. |
...
Entity[@_entityCode=ZFA:0001234 |
...
]&roleName=_definitionList&codingSchemeName=Zebrafish |
Code Block |
---|
CTS2 does not permit the user to specify what properties should be returned by a search. The Definition will be returned within the body of results from an entity query.
Show Supported Associations for a CodingScheme - Not supported
CTS2 does allow the retrieval of specific associations attached to a given concept or coding scheme but does not support the listing of all supported associations
Code Block |
---|
http:// |
...
lexevsapi6.nci.nih.gov/ |
...
lexevsapi64/ |
...
GetXML?query=org.LexGrid.naming.SupportedAssociation&org.LexGrid.naming.SupportedAssociation&codingSchemeName=Zebrafish |
Code Block |
---|
http://lexevsapi.nci.nih.gov/lexevsapi50/GetHTML?query=org.LexGrid.naming.SupportedAssociation&org.LexGrid.naming.SupportedAssociation&codingSchemeName=Zebrafish |
...
caCORE to LexEVS XML Mapping
The results from CTS2 are formatted in the LexEVS model which varies somewhat from the caCORE model. This mapping spreadsheet was created to allow users to update their parsers to use the new format.
Scrollbar | ||
---|---|---|
|