Page History
Name | Description | Link | ||||
---|---|---|---|---|---|---|
Pentaho | BI framework | https://github.com/pentaho | ||||
Neo4j | Native graph DB | https://neo4j.com/ | ||||
Neo4j visualization | Tools to view the graphDB | https://neo4j.com/developer/guide-data-visualization/ | ||||
SciGraph | Stores ontologies in a native graph backend | https://github.com/SciGraph/SciGraph | ||||
Kettle (Pentaho) | ETL tool | https://github.com/pentaho/pentaho-kettle | ||||
Neptune (AWS) | Native graph db | https://docs.aws.amazon.com/neptune/#lang/en_us | ||||
KNIME | Workflow engine for data science | docsaws.amazon/neptune/#langen_us | ||||
CWL | Common Workflow Language | Common Workflow Language User Guide | ||||
TinkerPop (Apache) | Open graph computing framework | http://tinkerpop.apache.org/ | ||||
Tidy Data | Conceptual framework for arranging data | The actual paper by Hadley Wickham | ||||
Elasticsearch Elastic Search (Elastic) | "Document" database | https://www.elastic.co/ | ||||
Pypher | Python Library to write Code in Cypher | https:/ | Neo4J | Graph Database | /github.com/emehrkay/Pypher | |
WDL | Workflow Description Language (Broad) | https://software.broadinstitute.org/wdl/ | ||||
Cromwell | WDL runner | https://github.com/broadinstitute/cromwell | ||||
Rabix | CWL Runner | http://rabix.io/ | ||||
GA4GH Cloud Workstream | DOS, WES, TES, TRS | https://github.com/ga4gh | ||||
Toil | CWL/WDL runner and WES implementation | http://toil.ucsc-cgl.org/ | ||||
FHIR (Fast Health Interoperability Resources) | Framework for intersystem communication of health information | https://hl7.org/fhir/ | ||||
Nextflow | Workflow approach using traditional programming languages | |||||
Model Mapper | Maps from one model to another using scripting. | http://modelmapper.org/ | ||||
DICOM viewer | Online Image viewer | http://www.microdicom.com/ | ||||
DICOM server | Orthanc | https://neo4j.com/ | AWS Neptune | AWS Graph DB Managed Service | https://awswww.amazonorthanc-server.com/neptune//download.php | |
DICOM viewer | OHIF viewer | http://ohif.org/ | ||||
NBIA installation package | National Biomedical Imaging Archive | National Biomedical Imaging Archive - NBIA#NBIA-NBIAInstallationFilesandReleaseNotes | ||||
NCI Imaging community call | Call for imaging community | NCI Imaging and Informatics Community Webinar | ||||
De-identification info @ TCIA | de-identification notes | https://wiki.cancerimagingarchive.net/display/Public/De-identification+Knowledge+Base | ||||
UCSC Genome Browser | Genome browser | UCSC Genome Browser | ||||
Genomics at scale | Genomics platform implemented in Apache Spark | Data Bricks Delta |