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Page History
Name | Description | Link | |||
---|---|---|---|---|---|
Pentaho | BI framework | https://github.com/pentaho | |||
Neo4j | Native graph DB | https://neo4j.com/ | |||
Neo4j visualization | Tools to view the graphDB | https://neo4j.com/developer/guide-data-visualization/ | |||
SciGraph | Stores ontologies in a native graph backend | https://github.com/SciGraph/SciGraph | |||
Kettle (Pentaho) | ETL tool | https://github.com/pentaho/pentaho-kettle | |||
Neptune (AWS) | Native graph db | https://docs.aws.amazon.com/neptune/#lang/en_us | |||
KNIME | Workflow engine for data science | docsawsamazon.neptune/#lang/en_us | |||
CWL | Common Workflow Language | Common Workflow Language User Guide | |||
TinkerPop (Apache) | Open graph computing framework | http://tinkerpop.apache.org/ | |||
Tidy Data | Conceptual framework for arranging data | The actual paper by Hadley Wickham | |||
Elasticsearch Elastic Search (Elastic) | "Document" database | https://www.elastic.co/ | |||
Pypher | Python Library to write Code in Cypher | https://github.com/emehrkay/Pypher | |||
WDL | Workflow Description Language (Broad) | https://software.broadinstitute.org/wdl/ | |||
Cromwell | WDL runner | https://github.com/broadinstitute/cromwell | |||
Rabix | CWL Runner | http://rabix.io/ | |||
GA4GH Cloud Workstream | DOS, WES, TES, TRS | https://github.com/ga4gh | |||
Toil | CWL/WDL runner and WES implementation | http://toil.ucsc-cgl.org/ | |||
FHIR (Fast Health Interoperability Resources) | Framework for intersystem communication of health information | https://hl7.org/fhir/ | |||
Nextflow | Workflow approach using traditional programming languages | ||||
Model Mapper | Maps from one model to another using scripting. | http://modelmapper.org/ | |||
DICOM viewer | Online Image viewer | http://www.microdicom.com/ | |||
DICOM server | Orthanc | AWS Neptune | AWS Graph DB Managed Service | https://awswww.amazon.com/neptune/orthanc-server.com/download.php | |
DICOM viewer | OHIF viewer | http://ohif.org/ | |||
NBIA installation package | National Biomedical Imaging Archive | National Biomedical Imaging Archive - NBIA#NBIA-NBIAInstallationFilesandReleaseNotes | |||
NCI Imaging community call | Call for imaging community | NCI Imaging and Informatics Community Webinar | |||
De-identification info @ TCIA | de-identification notes | https://wiki.cancerimagingarchive.net/display/Public/De-identification+Knowledge+Base | |||
UCSC Genome Browser | Genome browser | UCSC Genome Browser | |||
Genomics at scale | Genomics platform implemented in Apache Spark | Data Bricks Delta |