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Product Changes

Items marked New Feature: can be found in the GForge project Feature Requests tracker group. Items marked Bug: can be found in the Bugs tracker group.

• New Feature: Short description of new feature, for example, Show all CD's from all contexts by default
  Hyperlinked GForge tracker number

• Bug: Short description of bug, for example, Wrong modifier(for old version) and creator(new version) while creating a new version of DE, DEC or VD
  Hyperlinked GForge tracker number

Continue the previous pattern for each software change.

Important Remaining Issues

National Cancer Institute Center for Bioinformatics
Product LexEVS 5.0 Release Notes
May 08 2009

Product Changes

• New Feature: Removed convenience methods for codeToName
  EVS:CF#15222
• New Feature: Update to work with SDK 4.1
  EVS:CF#15942
• New Feature: Javadocs should open in new window
  EVS:CF#16686
• New Feature: LexBIG GUI launch support for OSX environment
  EVS:CF#16989
• New Feature: Import RRF Representation of Relationship Groups
  EVS:CF#17019
• New Feature: CodingSchemeId not present in exported LexGrid XML
  EVS:CF#17183
• New Feature: OWL Loader Enhancements
  EVS:CF#17233
• New Feature: Finalize BDA for 5.0 release
  EVS:CF#17508
• New Feature: Model revisions & readiness for Silver/Gold Compatibility
  (scope modified & approved 1/14/09)
  EVS:CF#17509
• New Feature: 5.0 Data Services/SDK
  EVS:CF#17511
• New Feature: 2009/01 model changes
  (please see Gforge tracker for more detail on the nature of the changes and further descriptions)
  EVS:CF#18449
• New Feature: Add 'namespace' to the Lucene Indexes
  EVS:CF#19883
• New Feature: Change name of ProtegeFramesLoader to RadlexProtegeFramesLoader
  EVS:CF#19888
• New Feature: Rename getParentsOf() and getChildrenOf()
  EVS:CF#19889
• New Feature: Support query of non-concept entities
  EVS:CF#19890
• New Feature: Creation of XSL stylesheets for transformation of LexBig data to n-1 LexBig versions
  EVS:CF#20043

• Bug: Implement getAssociation for EVS API web service
  EVS:CF#15091
• Bug: Two constructors create ConceptReferenceList methods throw exceptions
  EVS:CF#15976
• Bug: Example to dump/query auxiliary metadata
  EVS:CF#16508
• Bug: Better error handling for invalid search criteria in http interface
  EVS:CF#16579
• Bug: Users should have the ability to request Search results be sorted
  EVS:CF#17161
• Bug: Remove JUnit test dependency on 'Automobiles' vocab for LexEVS Grid Services
  EVS:CF#17405
• Bug: Change -nf option to -fe (fail on error)
  EVS:CF#17410
• Bug: EntityDescription not assigned to the NCI PT (rdfs:label) using Scrubber output
  EVS:CF#17421
• Bug: LexBIG History 'getEditActionList' Error
  EVS:CF#19411
• Bug: Owl loader fails when duplicate objectProperty is loaded from two namespaces
  EVS:CF#19462
• Bug: Supported Coding Scheme default is set even when coding scheme name is specified in manifest
  EVS:CF#19484
• Bug: Applying manifest with only an association forward/reverse name receives 'String index out of range' exception.
  EVS:CF#19485
• Bug: CodedNodeGraph not resolving across ontology boundary
  EVS:CF#19492
• Bug: Entity 'isActive' not being indexed correctly on Postgresql and MS Access
  EVS:CF#19573
• Bug: Problem applying supportedNamespace
  EVS:CF#19586
• Bug: Unable to load NCIT v9.01d and other large ontologies
  EVS:CF#19600
• Bug: Equivalent CodingScheme on SupportedNamespace default value not being set correctly.
  EVS:CF#19628
• Bug: Relationships not resolving that contain a Namespace that has a localId that does not match the CodingScheme.
  EVS:CF#19629
• Bug: CodingSchemeProperties not being persisted to the database.
  EVS:CF#19702
• Bug: LexBIG property behavior does not match EA model
  EVS:CF#19716
• Bug: Transitivity Table not being built
  EVS:CF#19741
• Bug: Supported Hierarchies not being fully populated in 2.3 - 5.0 Compatibility Test
  EVS:CF#19864
• Bug: LexBIG 2.3 xml import command fails
  EVS:CF#19900
• Bug: Metathesaurus history accessing wrong column name
  EVS:CF#20032
• Bug: Owl loader ClassCast Exception while loading OWLObjectProperties
  EVS:CF#20037
• Bug: Lucene Indexer fails with empty EntityDescription
  EVS:CF#20068
• Bug: EMF loaders fail while inserting CodingScheme Properties
  EVS:CF#20070
• Bug: Exception entering null into BIGINT column on PostgreSQL database.
  EVS:CF#20193
• Bug: Blank description in the Service Context on grid portal
  EVS:CF#20419

Important Remaining Issues

Make use of logging consistent - eliminate system out. We will address this if time permits
EVS:CF#14971
The NCI_Thesaurus association Has_Salt_Form and Has_Free_Acid_Or_Base needs reverse name. We will address this if time permits.
EVS:CF#15975
gov.nih.nci.evs.domain.Atom.getLUI does not return value. We will address this if time permits.
EVS:CF#15667
Serializer Exception on org.apach.lucene.search.regenex. We will address this if time permits.
EVS:CF#16678
Results not Deserializing Properly when using QueryModifiers on CQL Queries
EVS:CF#19406
Root concepts found by ListHierarchyMetaBySource when running against NCI MetaThesaurus with source set to NCI are different from root concepts in NCI Thesaurus.
EVS:CF#20354

CORE Product Dependencies

Refer to the CORE Product Dependency Matrix for the caCORE SDK and other software technologies on which this release of this product relies.

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