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A new project file will need to be created using the raw OWL file located in /app/protégé/data/Protégé_x.x/<PROTÉGÉ INSTANCE>.  See Appendix D for instructions Usually newer, more fresher data is available by the editors after performing a PROMPT of production data.  Each baseline file that is created after each session can be used as test data.  If however, by some reason, that an OWL file must be created manually,  instructions are available on how to export data from the production database, as well as converting into an OWL File.

  • As long as no changes have been made to the behavior of the startup scripts, the following files and scripts should be copied over from the old Protégé.Server version to the new folder:

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  • A window will display requesting the address of the source of the OWL file. Navigate to /app/protege/data/Protege_1x.4x/BiomedGT<PROTEGE-INSTANCE>/ and select BiomedGT-Fixed-wNS-DefaultAndPrefix.owl, and click next. Leave the next two windows to their default values, then click Finish.  Loading the file to the client will take approximately 5-10 minutes.

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