NIH | National Cancer Institute | NCI Wiki  

WIKI MAINTENANCE NOTICE

Please be advised that NCI Wiki will be undergoing maintenance on Thursday, May 23rd between 1200 ET and 1300 ET.
Wiki will remain available, but users may experience screen refreshes or HTTP 502 errors during the maintenance period. If you encounter these errors, wait 1-2 minutes, then refresh your page.

If you have any questions or concerns, please contact the CBIIT Atlassian Management Team.

Versions Compared

Old Version 4

changes.mady.by.user Unknown User (parkj4)

Saved on

compared with

New Version 5

changes.mady.by.user Unknown User (parkj4)

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

  • Advertise (email/chat) the server is going to be shutdown
  • Clean up Pre-Merged, and Pre-Retired concepts.
  • Remote login to the host computer using Reflection X
  • Shut down Protege server
  • Shut down explanation server
  • Start Protege client
  • Connect to database project by following the path: /app/protegeqa/data/Protege_1.2.3/NCIThesaurus/Thesaurus.pprj
  • Enable Prompt Tab in menu (in Project --> Configuration dialog)
  • Compare against previous baseline file / database project (pprj file).
  • Accept/reject changes
  • Save concept history (in "save" icon in 'Table View' tab)
  • Disable PromptTab (in Configuration dialog)
  • Adjust baseline version in Metadata tab
  • in In the Protege GUI menu, click 'Change',  'Clean up Changes Ontology'.  Ensure that 'Delete Changes' and 'Archive Changes' remain checked.  Click 'OK'.  After the process has been completed, click 'Change',   'Save Changes Ontology'
  • Export file for the next Prompt comparison or publication
    • Click 'File' -, 'Convert Project to Format',  'OWL/RDF Files
      • this creates a new project .pprj file and associated OWL file, give it a name with a date suffix, example: ThesaurusInterim-071120.pprj
  • Close project without saving, and exit client
  • In Reflection X console, navigate to /app/protegeqa/data/Protege_x.x.x/NCIThesaurus and look for any Thesaurus accept files: (Thesaurus-accept.pprj, pjrn, .rdf, rdfs) and remove them from the directory by typing 'rm Thesaurus-accept.pprj' and so on for the other files.
  • Start explanation server (always restart explanation server first before the Protege server)
  • For production tier at the end of the month:
    • Reopen Protege client
    • Click 'Project',   'Configure',  enable 'OWL Classes Tab'
    • Click 'OWL', 'Classify Taxonomy'
    • Save the Inferred Ontology using the save button on the Inferred Hierarchy section.  Give the naming convention 'Thesaurus-Inferred-YYMMDD.owl
  • Start up Protege server
  • Verify Protege server is up
  • Verify explanation tab communicates with the explanation server
  • Exit remote program
  • Advertise that the server is back up
  • For end-of-the-month publications, after performing a prompt, notify Tracy, John, or Rob of the availability of the new baseline
  • In the notification include: (a) the filename of the baseline and (b) the length of the time for the Prompt/export to file to complete.
  • The raw exports (OWL files only) will be archived in the private FTP site,and the processed exports in the anonymous FTP site.  This will keep the Protege server clean and organized.

...