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NameRolePresent
Wright, Larry NIH/NCI   x
Fragoso, Gilberto NIH/NCI     

De Coronado, Sherri    

NIH/NCI    x

Safran, Tracy

NIH/NCI    x
Ong, Kim L
IS x
Lucas, Jason R
IS x
Bauer, Scott  Mayo x
Stancl, Craig
Mayo x
Endle,  CoryMayo x
Wynne, Robert    NIH/NCI Brem, Larry  NIH/NCI [C]  NAx
Pan, JJ
NIH/NCI [E] x
Tran, Tin    NIH/NCI [C]  x
Ahmed, Shamim
NIH/NC [C]  
Haber, Margaret (NIH/NCI) 
Roth, Laura (NIH/NLM)  
Ramani, Vivek (NIH/NCI) [C]  
Carlsen, Brian (NIH/NCI) [C] 
Wong, Joanne   x

Kuntipuram, Kumar

  x

 

Action Items

 #AssignedDescriptionDate IdentifiedDue DateDate CompletedStatus
64ScottTo follow up on URI's on OWL2 with Harold.   on hold134ScottCreate a JIRA item to track the need to remove Struts   done
135JJFollow up on security scan to find out what kind found the Struts issue   open
136ScottPoint the CTS2 API page to Stage PROD (wiki) - originally planned on Stage, but now planning on PROD.   open
137ScottSet up a time to meet about Value Set Versions   done
138ScottTo note Grid Service retirement in 6 months   done
139KumarTo do an analysis of the Project plan for budgeting purposes.   open
140ScottUpdate struts jar to 2.3.16   

in progress

141149JasonScottContact Jacob about X11 access on DEVUpdate or Create a DRT to insure JSP page is not exposed on Production   done
142150ScottUpdate the wiki page to point to the lexevs/lexevs issuesDocument URI Resolver more thoroughly   done
143151ScottAsk Harold if he can stop into the next LexEVS meeting briefly   done
144ScottCreate an issue around the forward slash in search extension   done
145ScottScott to look at the indexes on DATA QA   done
146KimJIRA item for value set searches failing through distributed API   

done

147ScottSend Java version to TinJIRA Item to move master to lexevs/lexevs   doneopen
148152CraigProvide Estimates to Kumar on Struts implmentationSchedule project plan/roadmap meeting.   done149ScottContact Jacob about X11 access on DEV   open
150153ScottCraigSend JJ project plan and update email list for future emails.Document URI Resolver more thoroughly   open
151154ScottLarry

Provide an email update to NCBO, NLM, and Mayo with current activities and what has been built.

JIRA Item to move master to lexevs/lexevs

   

open

Progress

Harold, Gilberto and others to discuss:
Denise is interested in publishing caDSR content - she has been asked about the identifirers in caDSR are globally unique.   Denise is wondering what format these IDs should be used.  Particularly interested in hash vs slash.   Publishing from caDSR and accessing Value Sets in LexEVS.

 Harold provided a brief overview.  We will provide a copy of the slides.

Will use Harold's information as a starting point.

Use case:

A valid URI should return an HTTP status of 200 (Ok), when pinged.
Could provide links to let user look at further NCI or CTS2 information

Ideally, there would be a DNS entry (snomed.info) - however, not confident that id would be supported.

http://id.who.int/icd/release/10/2010/H44.5

Best approach would be to continue to include to discuss during the weekly calls.  

Immediate Priorities and Problems (Mayo Team)

Craig Project Plan Updates

  • Update the plan to include Struts work for both 6.0 and 6.1.
  • Include deployment of

    Scott:  CTS2 6.1 Service Deployment, 6.1.1

    and 6.0.?
  • Attempt to get waiver for appscan
  • Discussed struts work and deployment and the number of hours for deployment.
     
  • Scott:  Struts update, Mapping Index and other issues, Value Set Modules

    Struts update,  CTS2 Service Updates - Value Set Modules and CTS2 1.1 Based Framework

    • 6.1.1 Struts update - Scott generated testing reports and need to give those to Tin.  
    • CTS2 6.1 Service Deployment - URLS are pointing to stage.
    • 1.1 Based Framework - updates based on code review and issues identified (search and value set coding scheme and version).  
    • UI and CTS2 deployment - planning to get configured over the next week.   Testing distributed mode for CTS2 services.  
    • There will be documentation/code sample changes for the 1.1 based CTS2 framework services.  
    • Scott working on remaining Junits for the Struts update (6.1)
    • Struts update is on Dev - appscan could be run now.  Jason will make the request.   Possibly use this report and won't need to run on QA. 
    • There is a map search issue when searching (distributed).  Kim to create JIRA iteam.
    • Will continue to work on the value set modules on once Struts work is complete.   
    • Value Sets - Resolved Value Sets - Formal name (Jira ??) is in the current build. 
    • Do all jUnits need to be 100% clean, 508? and scans up the tiers?   
    • Can 6.0 users migrate to 6.1?  Larry suggested it should work this way, but not sure what this all affects.
    • Scott is currently using Java 1.6.0_65.  
    • Scott to send version of Java to NCI team.
    • Struts update is on NCI Dev now.  Jason will request an app scan on it.
    • Mapping Issue - issue with some client code.  Issue went away when Tracy went to a local API.
    • Issue on searching with maps in distributed.
    • JIRA issue to be created by Kim.
    • VS Module work - still working on.
    • Resolved VS fix on formal name works (JIRA item)

    Cory:  CTS2 Client UI, Informatics Deployment

    • NLM services (
    • Able to resolve value set entries in the client.
    • Starting to work on the 1.0 service (NLM) utilizing the existing transforms. 
    • Common way to retrieve VS entries
      Researching libraries to to XML and XSLT transformatio
      caDSR and Value Set and other URIs
    • based)  and transforming to the 1.1 based client.   This is complete.   Next need to incorporate the NLM authentication.
    • Search has been included in the client to allow users to search on value set names. 
    • Informatics configuration is planned and hope to have deployed in next week or 2. 

    Craig: Project Plan Updates

    • Add JJ to the project plan list
    • Schedule meeting with Sherri, Larry, Kumar, JJ to discuss project plan and roadmap. 
    • Tech Stack and associated dependencies.  Identified by JUnits once components are upgraded.  
      
    caDSR and Value Set and other URIs (Weekly Status)
    • No updates this week
      Tech Stack Notes

    Revisit Java 1.8 update

    • Decision to be made in May 2014 regarding 1.8. 
    • If can push the 1.7 update, then that would give time to determine availability of 1.8 at NCI.
    • However, Scott suggests that we do start update to 1.7 sooner than later.  
    • Anticipated 1.8 issues - there are differences in Java that cause compiler issues.  (Tracy)
    • Agreed that we will move to 1.7.
      
    Continuing Development through next fiscal year (Larry)Kumar)
    • Will provide more details during planning meeting.  

    Kumar  to deliver a project plan analyses.

    • Need to have Struts added to the plan. 
    • Craig will do this and provide to Kumar as soon as possible.
      Struts Security Update (Jason)
    Status (see aboveMax clause count issue (update)
    •  
     
    6.1 Deployment

    Issues with CTS2

    • Scott can return to this issues once complete with Struts.  
    • May need assistance from systems team to get access to logs.  (contact Jacob)  
      
    Max clause count issue.

     Nci to report on follow up 

    • Strategy was to increase max count and verify if would work or not.  Tracy to make the request.  Highest tested was 800k.  Scott to check with Kevin on what effect this max will have on memory/resources.  
    • Scott to look into breaking up the indexes. 
    • This issue is against the API directly.   Breaking up the index may not not help in this case.   

    NCI to report on follow up    

    •  There was a problem going directly against the API.
    •  Look at this again when we evaluate Lucene
    • lbConfig.prop to be updated to 800,000  NCI/Tracy to put in a ticket to do this.      
      Scott to discuss with Kevin what type of memory increase this may be or other issues it may cause
      
    Discuss search issues around forward slash / in contains search

    JIRA item done discuss priority

    • This is against the search extension.
    • Scott created Jira item
    •  Consider this as part of the Lucene evaluation. 
    • JIRA item done discuss priority 
    • Issue with the contains search. 
    • Issue with the search extension.
    • This is after the VS module work.  And during the Lucene investigation.        
    •   Scott to look at the analyzers for this. 
      
    Mapping Index issues

    Discuss Stack Trace and report on updating of browser code

    • see above
      
    URI Resolver Documentation
    • included as part of installation.
    • Scott can provide text to describe what the URI resolver is and how it is installed as part of the CTS2 LexEVS Service.
    • When updating Data, what needs to be restarted?  (Tracy)  Scott to document this.    
      
    • Scott checked with Kevin about the proposal for Tracy to change to 800K.  Kevin said this is defaulting to 1000 in Lucene - anything above that is undefined.   No idea how things will perform.  Tracy did test on Data QA by incrementing 100k at a time.  
    • Tracy will continue to evaluate - better than having it fail for the user. 
    • Scott could evaluate as well, but this is lower priority for now.  NCI will evaluate now. 
      
    NCI, NLM, NCBO and Mayo Planning (Monthly Meetings, Face to Face)
    • Provide an email update with current activities and what has been built.   (Larry)
    • No interest in monthly (at this time).
    • Face to Face could be discussed.  (June/July or September)
      
    Struts 6.0 Update
    • Not an immediate task.  Users should be able to move from LexEVS 6.0 to LexEVS 6.1.  If LexEVS 6.0 were to get shut down, then this could come back as a higher priority. 
      
    URI Resolver Documentation  
    UMLS Mapping Files
    • Tracy cannot get that to load - Mappings.   Tracy to send Scott the details and he can take a look. 
      
    FDA Codes (REST service)
    • ISO Country and Region codes in Meta and retrievable via advanced search.  Need to figure out how to make available to FDA users - possible REST call that would pull out content and return via a REST call.   Would use CTS2 LexEVS services to pull this content.   Can currently can do an advanced search.  
    • If created as a Value Set, then possible to use CTS2 resolved value set services.   
    • NCI will continue to look at this.  Can provide weekly updates.
    GitHub
    • The lexevs/lexevs was going to be location for issues
    • Continued development would be in lexevs/lexevs
    • At release time, code would be from lexevs/lexevs into NCIP channel
    • NCIP will fork from lexevs/lexevs.  (Need a JIRA Item for this)
      

     

     

     

    JIRA Issues

    Description
    Jira
    serverNCI Tracker
    keyLEXEVS-570
    Jira
    serverNCI Tracker
    keyLEXEVS-572
    Jira
    serverNCI Tracker
    keyLEXEVS-573
    Jira
    serverNCI Tracker
    keyLEXEVS-574
    Jira
    serverNCI Tracker
    keyLEXEVS-576
    Jira
    serverNCI Tracker
    keyLEXEVS-579
    Jira
    serverNCI Tracker
    keyLEXEVS-583586
    Jira
    serverNCI Tracker
    keyLEXEVS-584594
    Jira
    serverNCI Tracker
    keyLEXEVS-585597
    Jira
    serverNCI Tracker
    keyLEXEVS-586598
    Jira
    serverNCI Tracker
    keyLEXEVS-587599
    Jira
    serverNCI Tracker
    keyLEXEVS-588605
    Jira
    serverNCI Tracker
    keyLEXEVS-589606
    Jira
    serverNCI Tracker
    keyLEXEVS-592607
    Jira
    serverNCI Tracker
    keyLEXEVS-593608
    Jira
    serverNCI Tracker
    keyLEXEVS-594609
    Jira
    serverNCI Tracker
    keyLEXEVS-595612
    Jira
    serverNCI Tracker
    keyLEXEVS-596613
    Jira
    serverNCI Tracker
    keyLEXEVS-597615
    Jira
    serverNCI Tracker
    keyLEXEVS-598616
    Jira
    serverNCI Tracker
    keyLEXEVS-599617
    Jira
    serverNCI Tracker
    keyLEXEVS-600618
    Jira
    serverNCI Tracker
    keyLEXEVS-601619
    Jira
    serverNCI Tracker
    keyLEXEVS-602620
    Jira
    serverNCI Tracker
    keyLEXEVS-603621
    Jira
    serverNCI Tracker
    keyLEXEVS-604622
    Jira
    serverNCI Tracker
    keyLEXEVS-605623
    Jira
    serverNCI Tracker
    keyLEXEVSLEXEVSCTS2-6062
    Jira
    serverNCI Tracker
    keyLEXEVS-607
    Jira
    serverNCI Tracker
    keyLEXEVS-608
    Jira
    serverNCI Tracker
    keyLEXEVS-609LEXEVSCTS2-3

    Project Plan Changes

    #DescriptionDue DateResourcesNotesRisksMitigation
     None     
           
           

    ...