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This section chapter describes caNanoLab features associated with caNanoLab's publication features. Topics discussed in this section include:
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When you click the Publications menu, from Manage Publications you can
You can also perform the following functions with a publication.
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Create Publication allows you to identify a publication and associate it with one or more samples.
To create a sample publication
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Select (or review) the type of publication from the drop-down list. Pre-selected if starting from within a sample.
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Title*
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Enter the title. (Refer to PubMed ID description for how to auto-populate this field)
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Authors
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To edit an author, click Edit, make changes to the name, and click Save. The changes are saved.
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Keywords
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Enter a term that can be used in a search query to find the publication. Enter one keyword on each line.
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Enter the description for the publication.
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Upload
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Enter File URL
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Click Browse to navigate to the publication to be associated with the sample, or enter the URL where the publication is located.
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Sample Name
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There are two options to add samples to a publication:
Enter one sample name per line in the Sample Name box.
OR
Click Search Samples and a list of samples appears in a list box. Select one or more samples. To select multiple samples, you can Shift-click or Ctrl-click. Click Select, and the selected samples are added to the Sample Name box.
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When you are done entering information, click Submit.
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After saving, the publication is listed on My Workspace where you can manage all of your saved publications, and view any publications that a user has shared with you. |
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Once you save the publication, the Edit Publication page opens. With the appropriate security permissions you can
Edit the publication information.
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To edit a publication
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From the Edit Publication page edit the following information as needed.
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Description
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Publication Type*
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The criteria displayed varies depending on the Publication Type that you select. |
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Publication Status*
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In the drop-down list, review the status.
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PubMed ID
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Appropriate DOI.
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Title*
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Enter text for the title of a publication.
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Journal
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Journal in which publication occurs.
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Year of Publication
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Year of the publication.
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Volume
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Volume of the publication
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Start/End Page
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Page range for the publication
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Authors
To add an author to the publication, click Add. In the panel, enter the Last Name, First Name, and Initials of the author. Confirm that you have read and understood the following message. Click Save.
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To edit an author, click Edit, make changes to the name, and click Save. The changes are saved.
To remove an author, click Edit next to the author's name, and click Delete in the panel.
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Keywords
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Enter one or more logical terms that can be used to find the publication. Enter one term per line.
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Description
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Enter a description for the publication.
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Research Category
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Upload
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Enter File URL
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Click Browse to navigate to the publication to be associated with the sample, or enter the URL where the publication is located.
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Sample Name
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There are two options to add samples to a publication.
Enter one sample name per line in the Sample Name box.
OR
Click Search Samples and a list of samples appears in a list box. Select one or more samples. To select multiple samples, you can Shift-click or Ctrl-click. Click Select, and the selected samples are added to the Sample Name box.
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Access to the Publication
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When you are done editing the publication, click Submit.
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To search for existing saved publications
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Click Publications. The Manage Publications page appears.
Click Search Existing Publication.
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From Search Publications, fill in the following information as needed.
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Publication Type
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Select the type of publication from the drop-down list.
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Research Category
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PubMed ID
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Enter the name of the digital object ID, if known.
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Publication Title
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Enter text for the title of a publication. Select Contains (for search using partial text) or Equals (for exact text search).
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Authors
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Enter the last name of an author. For more authors, add one author's last name per line.
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Keywords
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Enter one or more logical terms that can be used to find the publication. Enter one term per line.
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Sample Name
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Enter text for the name of a sample. Select Contains (for search using partial text) or Equals (for exact text search).
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Composition
Nanomaterial Entity
Select the nanoparticle category to which the sample targeted by the search belongs. Example: Dendrimer
Functionalizing Entity
Select the functionalizing category to which the sample targeted by the search belongs.
Function
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Click Search. The Publication Search Results page appears.
Publication Results
Publications Search Results display sorted by Creation Date with information appropriate for the publication type.
The following table lists and describes the Publications Search Results columns.
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Click View in the first column to display the publication abstract and information on the PubMed web site.
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Edit is only available for people that have an account and are logged into the system and are associated with the publication. |
Click Add to Favorites to add a bookmark for the publication on your My Favorites. When the system has successfully added the publication to your favorites, the Added to Favorites message appears in the column.
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Bibliography Info
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Lists bibliography information about the publication and provides a link to the publication abstract at PubMed.gov.
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Type
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The publication category you selected when you created the report.
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Research Category
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The research category you selected when you created the document.
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Associated Sample Names
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Names of sample(s) associated with the publication
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Status
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Review the status.
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Created
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Date the publication was submitted
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To search for publications associated with one or more samples
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Sample by Publication Search Results
The following table lists and describes the Sample Information by Publication Search Results columns.
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Publications Search Results Columns
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Description
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Publication REF
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Click the hyperlink to open PubMed.gov for that Publication.
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Authors
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The author(s) of the publication.
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Title
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The title of the publication.
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Sample Composition
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Click the link to open the caNanoLab Sample Composition form.
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Sample Characterization
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Click the link to the open the caNanoLab Sample Characterization form.
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Journal
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The journal where the publication was published.
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Year
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The year that the journal was published.
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Vol(Lss)Pg
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The volume and page number in the journal where the publication was published.
For any entry, click on the hyperlink in the Publication REF column (first) to open the associated file.
Additional Publication Tasks
The following table lists how to edit a publication with the following techniques.
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Once data is made Public, you can update the data, but it will be retracted from Public and you will need to resubmit it to the curator again for review. |
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| If a button does not display, you have read-only access to the data. |
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Printing Publication(s)
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To print the publication(s)
- Click Sample and Search Existing Samples.
- Click Edit in the search results.
- In the Navigation Tree, click Publication. The All tab displays the summary of any publications associated with the sample.
- Click Print at the top right of the page.
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Exporting Publication(s) to a Spreadsheet
To export the publication(s) to a spreadsheet
- Click Sample and Search Existing Samples.
- Click Edit in the search results.
- In the Navigation Tree, click Publication. The All tab displays the summary of any publications associated with the sample.
- Click Export at the top right of the page.
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To export all publication information to JSON or XML, refer to Exporting Sample Information to JSON or XML |
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Deleting a Publication from a Sample
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Deleting a publication from a sample removes its association with the open sample. The publication remains in the database and is available for other samples.
To delete a publication from a selected sample
- Click Sample and Search Existing Samples.
- Click Edit in the search results.
- In the Navigation Tree, click Publication. The All tab displays the summary of any publications associated with the sample.
- Click Edit at the right of the section you want to delete.
- From Publication, click Delete.
- Confirm the deletion.
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My Favorites displays samples, protocols, and publications that you bookmark for quick access.
To add a publication to My Favorites
- Click Publication and Search Existing Publication.
- From the search results, click Add to Favorites in the Actions column.
When the system has successfully added the publication to your favorites, the Added to Favorites message appears in the column.
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Once a publication is saved and associated with one or more samples, when you search for and edit the sample, you can view the publication(s) from the Navigation Tree, Publications option.
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| If you use the Publications menu, you can associate multiple samples with one publication. If you open a sample first from the Navigation Tree, you can copy the publication to additional samples the same way you copy characterizations to multiple samples. For details, refer to Copying a Characterization to Samples in the Same Primary Organization. |
To access publications function in the Navigation Tree
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The Navigation Tree appears on the left sidebar and comprises functions which you can use to add annotations to the sample.
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Click Publication.
The All tab displays publications associated with the sample, and the publication identifier, title, authors and year, where appropriate. Additionally, each publication category tab displays its corresponding publications.
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 With read-only access, you can review a summary of the publications added to the sample on the All tab. |
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