Page History

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Publications Overview

When you click the Publications option on the caNanoLab menu bar, the Manage Publications home page appears. The panel on the page provides the following options:

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Once a publication is submitted and associated with one or more specific samples, when the sample is opened in caNanoLab, the associated publications are listed on the Publication All tab. Where appropriate, the publication list includes hypertext links so you can open the publication(s).

Submitting a Publication

The Submit Publication feature allows you to identify a publication and associate it with one or more samples.

To define a sample publication, follow these steps:

When no sample is selected:

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1. Click Publication from the Navigation Tree when a sample is open. Click the Add button that corresponds to the publication type you plan to add.
   From this point on, the process is very similar. Variations in the steps are noted in the following table.
   Select

   1. The following table lists and describes each field. Select or enter the appropriate information in the text fields and drop-down lists.

   Fields are described in the following table.

   1. Tip
      title Other options
      By default, all fields are blank. Include Page Other options Other options

      Fields may change, depending upon your launching point and your selection of Publication Type. Asterisks indicate required fields.

   tip

   1. Sample Publication Criteria

   title	Other options

   By default, all fields are blank. Other optionsSample

   1. Description
      Publication Type*	Include Page

   Other options

   1. Publication

   CriteriaDescription

   Publication Type*

   Include PagePublication

   1. type Publication type
      Publication Status*	Include Page Publication status Publication status

   Research Category* Include PageResearch categoryResearch category

   PubMed ID

   Enter the PubMed ID (click the Click to look up PubMed Identifier hypertext link where you can search for the ID).  Include PagePubMed IDPubMed ID

   Digital Object ID

   Enter the digital object ID, if you know it.

   Title

   Enter the title. (See PubMed ID description for how to auto-populate this field)

   Journal

   Enter the journal. (See PubMed ID description for how to auto-populate this field).

   Year of Publication/Volume

   Enter the year of the publication and the volume, where available.

   Start Page/End Page

   Enter the page range for the publication.

   Authors

   Enter the name of one author. (See PubMed ID description for how to auto-populate this field). Click Add Author to add additional authors.

   Keywords

   Enter a term that can be used in a search query to find the publication.

   Description

   Enter an appropriate description for the publication.

   Upload File
   or
   Enter File URL

   Click the Browse button to navigate to the publication to be associated with the sample, or enter the URL where the publication is located.
   Note: This field appears on the page only when opened from the Publication menu option, not the Navigation Tree.

   Sample Name*

   Enter the exact or partial name and click the search icon ( Image Removed) to find the names of samples in caNanoLab. Select one or more sample sample names to be associated with the publication.

   Notes:

   • You can submit a publication without identifying a sample ID.

   • If you are submitting a publication from within an open sample, this field is replaced by the Copy section, described below.

   Copy

   This section replaces the Sample Name field if you are submitting a publication from within an open sample. If that is the case, you can use this copy feature to associate the publication with other samples to which you have access.
   Select one or more samples to be associated with this publication.

   Access to the Publication Access to the Publication can be assigned to either Collaboration Groups or Users. Click the search icon Image Removed to select select from collaboration groups to which you have read access.
   When you submit new data into the system, by default, the person submitting the data and anybody in the Curator group automatically have CURD (create, update, read, delete) access to the data. Other access must be manually assigned through this function.
   1. To clear the fields and start again, click Reset.
   2. Once you enter the appropriate information on the form, click Submit.

   Editing a Publication

   1. 1. Title*	Enter the title. (See PubMed ID description for how to auto-populate this field)
         Year of Publication	The year that the publication was published.
         Authors	Enter the name of one author. Enter one author on each line.
         Keywords	Enter a term that can be used in a search query to find the publication. Enter one keyword on each line.
         Description	Description for the publication.
         Research Category*	Include Page Research category Research category
         Upload File or Enter File URL	Click the Browse button to navigate to the publication to be associated with the sample, or enter the URL where the publication is located.
         Sample Name*	Enter one Sample Name per line. Add information about Search and Select.
         Access to Publication	For more information, see 6 - Managing Publications in caNanoLab 2.1 DRAFT.

         To clear the fields and start again, click Reset.

   2. Once you enter the appropriate information on the form, click Submit.

   Editing a Publication

   You can edit You can edit a publication using the following techniques:

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   Tip
   Publication criteria may change, depending upon the Publication Type of the selection.

   Details are described in the The following table lists and describes the fields. An asterisk indicates a required field. Click Update when you are done editing the Protocol. To disregard the changes, click Reset.

   Publication Criteria	Description
   Publication Type*	Include Page Publication type Publication type
   Publication Status*	Include Page Publication status Publication status
   PubMed ID	PubMed ID (can be a hypertext link). PubMed ID Include Page PubMed ID
   Digital Object ID	Appropriate DOI
   Title	Publication title. (See PubMed ID description for how to auto-populate this field)
   Journal	Journal in which publication occurs.
   Year of Publication	Year of the publication.
   Volume	Volume of the publication
   Start/End Page	Page range for the publication
   Authors	Publication author: To add an author, click Add, enter the First Name, Last Name, and Initials, and click Save. To update a name, click Edit, update the name information, and click Save. To remove a name, click Edit, the name appears, click Remove, and click Save. The Author is removed from the Publication.
   ID PubMed ID
   Digital Object ID	Appropriate DOI.
   Publication Title	Select contains or equals and enter a partial or complete Publication Title that contains or is the same as what you searching for.
   Journal	Journal in which publication occurs.
   Year of Publication	Year of the publication.
   Volume	Volume of the publication
   Start/End Page	Page range for the publication
   Authors	Enter one author per line.
   Keywords	Term that can be used in a search query to find the publication. Enter one keyword per line.
   Description	Description for the publication.
   Research Category*	Include Page Research category Research category
   Upload File or Enter File URL	Click the Browse button to navigate to the publication to be associated with the sample, or enter the URL where the publication is located.
   Sample Name*	One or more sample names to be associated with the publication.
   Access to the Publication	Lists the Group Name that has access to the Publication:  Curator Other?? Lists the type of Access that the Group has for the Publication: read update deleted

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   To launch a search for a specific publication, follow these steps:

   1. Click the Publications caNanoLab menu option. On the Manage Publication home page, click the Search Existing Publications link

      . This opens the Search Publications form..Select or enter the appropriate information in the text fields and drop-down lists. Fields are described in the following table. Asterisks indicate required fields.

      . This opens the Search Publications form.

      Tip
      When defining search criteria, there are no "required" fields. You can add only those parameters that you consider essential to the search. Add an asterisk for searching wildcards.

      TipIf you click the Search button having defined no parameters, all of the caNanoLab publications will be listed in the Search Results

      If you do not define any search criteria, caNanoLab will list all publications in the search results.

   2. The following table lists and describes the fields. Select or enter the appropriate information in the text fields and drop-down lists. Asterisks indicate required fields.

      Publication Search Options	Description
      Publication Type	Include Page Publication type Publication type
      Research Category	Include Page Research category Research category
      PubMed ID	Enter the PubMed ID, if known. Include Page PubMed ID PubMed ID
      Digital Object ID	Enter the name of the digital object ID, if you know itknown.
      Publication Title	Enter Select contains or equals to enter a partial or complete Publication Title that contains or is the same as the name of the document.
      Authors	Enter the name(s) of the authors. Enter one author per line.
      Keywords	Enter a logical term that can be used to find the publication. Enter one term per line.
      Sample Name	Enter the name of the sample.	There are two ways to search by Sample Name. You can use one way or use them in combination. Select either contains or equals from the drop-down and enter a partial or complete Sample Name that contains or is the same as what you are searching for.
      Composition Composition Nanomaterial Entity	Nanomaterial Entity Select from the drop-down list the nanoparticle category to which the sample targeted by the search belongs. Example: Dendrimer Composition Functionalizing Entity Select from the drop-down list the functionalizing category to which the sample targeted by the search belongs. Antibody Biopolymer Small molecule Function Include Page Function type Function type

   3. To clear the form and start again, click Reset.
   4. To launch the search, click Search.

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