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This section describes caNanoLab features associated with caNanoLab's publication features. Topics discussed in this section include:
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Publications Overview
When you click the Publications option on the caNanoLab menu bar, the Manage Publications home page appears. The panel on the page provides the following options:
- Submit a New Publication: This takes you to a form for submitting a new caNanoLab publication. For more information, see 6 - Managing Publications in caNanoLab 2.1 DRAFT. Submitting a Publication.
Search Existing Publications: This takes you to a form to launch a search for an existing publication of interest. For more information, see 6 - Managing Publications in caNanoLab 2.1 DRAFT. Searching Publications.
Info title Keyword Search This section describes the basic publication search. You can also perform a keyword search using the Search box in the upper-right of the caNanoLab window. This option searches across protocols, samples, and publications. For more information see, Getting Started.
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If you work from the Publications menu option discussed in this section, you can associate multiple samples with a publication. If you add publications to an open sample, you can use the copy feature to associate the publication with other samples. |
Submitting a Publication
The Submit Publication feature allows you to identify a publication and associate it with one or more samples.
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- Click Publication from the Navigation Tree when a sample is open. Click the Add button that corresponds to the publication type you plan to add.
From this point on, the process is very similar. Variations in the steps are noted in the following table.The following table lists and describes each field. Select or enter the appropriate information in the text fields and drop-down lists.
Tip title Other options By default, all fields are blank.
Include Page Other options Other options Fields may change, depending upon your launching point and your selection of Publication Type. Asterisks indicate required fields.
Sample Publication Criteria Description Publication Type*
Include Page Publication type Publication type Publication Status* Include Page Publication status Publication status Title*
Enter the title. (See PubMed ID description for how to auto-populate this field)
Year of Publication Enter the year that the publication was published. Authors
To add an author to the publication, click Add. On the pop-up, enter a First Name, Last Name, and Initials of the author. Click Cancel or click Save to save the author to the Publication.
To edit an author, click Edit, make changes to the name, and click Save. The changes are saved.
To remove an author, from the Submit Publication page, click Edit next to the author's name, and click Remove on the pop-up.
Keywords
Enter a term that can be used in a search query to find the publication. Enter one keyword on each line.
Description Enter the description for the publication. The maximum characters allowed is ?
Research Category* Include Page Research category Research category Upload
or
Enter File URLClick the Browse button to navigate to the publication to be associated with the sample, or enter the URL where the publication is located.
Sample Name*
There are two options to add samples to a publication:
Enter one sample name per line in the Sample Name box.
OR
Click Search Samples and a list of samples appears in a list box. Click a sample name or Ctrl-click or Shift-click to select more than one. Click Select, and the selected samples are added to the Sample Name box.
Access to Publication For more information, see 6 - Managing Publications in caNanoLab 2.1 DRAFT. Sharing and Changing Access to a Publication. To clear the fields and start again, click Reset.
- Once you enter the appropriate information on the form, click Submit.
Editing a Publication
You can edit a publication using the following techniques:
- Updating a Publication6 - Managing Publications in caNanoLab 2.1 DRAFT
- Sharing and Changing Access to a Publication
- Downloading a Publication
- 6 - Managing Publications in caNanoLab 2.1 DRAFT
- 6 - Managing Publications in caNanoLab 2.1 DRAFT
- Deleting a Publication
- Copying a Publication to a Sample
- Deleting a Publication from a Sample6 - Managing Publications in caNanoLab 2.1 DRAFT
Updating a Publication
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You can access the Update Publication page after logging into caNanoLab or you can access publicly-available sample publication results from the Login page. You can edit a publication only if you are logged in as a curator. |
The Publication Update page opens when you click the Edit link corresponding to a publication listed in 6 - Managing Publications in caNanoLab 2.1 DRAFTin Publication Search Results. The page displays all of the information for a Publication that was entered when the Publication was created in caNanoLab (Submitting a Protocol). With appropriate permissions, you can edit information.
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| Publication Criteria | Description | ||||||
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Publication Type* |
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Publication Status* |
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PubMed ID | PubMed ID (can be a hypertext link).
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Appropriate DOI. | |||||||
Title* | Enter text for the title of a publication. Select Contains (for search using partial text) or Equals (for exact text search). | ||||||
Journal | Journal in which publication occurs. | ||||||
Year of Publication | Year of the publication. | ||||||
Volume | Volume of the publication | ||||||
Start/End Page | Page range for the publication | ||||||
Authors | To add an author to the publication, click Add. On the pop-up, enter a First Name, Last Name, and Initials of the author. Click Cancel or click Save to save the author to the Publication. To edit an author, click Edit, make changes to the name, and click Save. The changes are saved. To remove an author, from the Submit Publication page, click Edit next to the author's name, and click Remove on the pop-up. | ||||||
Keywords | Enter a logical term that can be used to find the publication. Enter one term per line. | ||||||
Description | Enter a description for the publication. | ||||||
Research Category* |
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Upload | Click the Browse button to navigate to the publication to be associated with the sample, or enter the URL where the publication is located. | ||||||
Sample Name | There are two options to add samples to a publication: Enter one sample name per line in the Sample Name box. OR Click Search Samples and a list of samples appears in a list box. Click a sample name or Ctrl-click or Shift-click to select more than one. Click Select, and the selected samples are added to the Sample Name box. | ||||||
Access to the Publication | For more information, see Sharing ad Changing Access to a Publication. |
Sharing and Changing Access to a Publication
Is this option limited to curator's only?
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Downloading a Publication ???
If a publication is uploaded, with proper permissions you can download the publication. If the Download Publication link is available in the Download Publication field, then that means you can download it.
Deleting a Publication
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This action deletes the publication from the caNanoLab database, executed behind the scenes at a scheduled time. |
To delete a publication, perform a publication search, find the publication that you want to delete, and click the Edit link in the first column of the the 6 - Managing Publications in caNanoLab 2.1 DRAFT Publication Search Results page. The Update Publication page opens. From the Update Publication page, click the Delete button in the lower-left corner of the window. Confirm the deletion.
Copying a Publication to Samples
When you are in the process of adding a publication to a sample, on the Publication page you can copy that publication to other caNanoLab samples that have the same point of contact.
- From within an open sample, click the Publication link in the Navigation Tree.
- In the Copy text box, select one or more additional samples with which you want the publication associated.
- Click Submit. The publication is copied to other samples you selected.
Deleting a Publication from a Sample
To delete a publication for a selected sample, follow these steps:
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You can access this page after logging into caNanoLab or you can access publicly available sample publications from the Login page. |
The Search Publications feature looks for submitted existing publications or Publications can be associated with one or more samples.
Search Existing Publications
To launch a search for a specific publication, follow these steps:
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For information about search results, see 6 - Managing Publications in caNanoLab 2.1 DRAFT Publications Search Results.
Publications Search Results
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You can access this page after logging into caNanoLab or you can access publicly available sample publication results from the Login page. |
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| Publications Search Results Columns | Description | ||||||||||
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| Action | Click View in the first column to display the publication on the 6 - Managing Publications in caNanoLab 2.1 DRAFT. Publication Update Page.
Click the + Add to Favorites link to add a bookmark for the publication on your My Favorites tab. Added to favorites appears in the column when the P\publication is successfully added.
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Bibliography Information | Lists bibliography information about the publication and provides a link to the publication abstract at PubMed.gov. | ||||||||||
Publication Type | The publication category you selected when you created the report. | ||||||||||
Research Category | The research category you selected when you created the document. (Publications only) | ||||||||||
Associated Sample Names | Names of sample(s) associated with the publication | ||||||||||
| Description | Click View to display a popup with a complete description of the Publication. | ||||||||||
Publication Status |
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Created Date | Date the publication was submitted |
For any entry, click on the hypertext link in the Title column (first) to open the associated file.
Searching for Samples by Publication
To launch a search for samples by publication, follow these steps:
- Click the Publications caNanoLab menu option. On the Manage Publication home page, click the Search for Samples by Publication link. This opens the Sample Search by Publications form.
Specify the Type of sample ID, PubMed or DOI.
Enter the ID number.
To clear the fields, click Reset.
Click Search.
Tip If you click the Search button having defined no parameters, all of the caNanoLab publications will be listed in the Search Results.
Sample Information by Publication Search Results
Info title Access to this page You can access this page after logging into caNanoLab or you can access publicly-available sample publication results from the Login page.
The following fields are listed in the search results. To return to the Search page, click the Back (
) button not the Browser button.
Publications Search Results Columns Description Publication REF
Click the hypertext link to open the PubMed.gov page for that Publication.
Authors The author(s) of the publication.
Title
The title of the publication. Sample Composition
Click the link to open the caNanoLab Sample Composition form.
Sample Characterization
Click the link to the open the caNanoLab Sample Characterization form.
Journal
The journal where the publication was published.
Year The year that the journal was published. Vol(lss)Pg The volume and page number in the journal where the publication was published. For any entry, click on the hypertext link in the Title column (first) to open the associated file.
Adding a Publication to My Favorites
My Favorites displays samples, protocols, and publications that you bookmark for quick access.
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- Perform a publication search.
- Find the publication that you want to bookmark and click the + Add to Favorites link in the first column of the 6 - Managing Publications in caNanoLab 2.1 DRAFT Sample Search Results row.
The <publication name> has already been added to your favorites message appears in the results row. - Click the My Favorites option in the menu bar, and the bookmarked publication will be listed under My Publications.
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