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Ashish has the conceptual approach for an integrative query system. Learn his order of march.

Need to explain how the challenge management system and integrative query system play together in a scientific scenario.

Challenge Management System

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, MedICI

Jaysharee's program: Medical Imaging Challenge Infrastructure: MedICI

1. Based on open-source CodaLab
2. ePAD (created by Daniel Rubin's group at Stanford): tool for annotating images, creates AIM images
3. caMicroscope

http://miccai.cloudapp.net:8000/competitions/28

1. Competition #1: MICCAI challenge has a training phase where they train their algorithms. A test phase where they run their algorithms on images they have never seen before. They are compared to the ground truth that is determined beforehand. caMicroscope is used to see what is there before and to visualize the results. Overlap/completeness match determines the winner.
2. Competition #2: They are given slides.

From PPT: Use titles of slides

Setting up a competition by an organizer. Organizer creates competition bundle.

Can go to cancerimagingarchive.net and create shared lists. Shared lists are pulled into CodaLab. That is how they get the test and training data.

Next is to create ground truth.

Regions of interest in a tumor for annotations are necrosis, adema, and active cancer. Radiologists create the ground truth.

Once participants upload their results, they can see them in ePad.Description

Integrative Query System

What the data is used for