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The common infrastructure that will result from CTIIP and its sub-projects depends on data interoperability, which is greatly aided by adherence to data standards. While image data standards exist to support communicating image data in a common way, these the data standards are adhered to in a variable waythat do exist for image data are inconsistently adopted. One reason for the lack of uniform adoption is that vendors of image management tools required for the analysis of imaging data have created these tools so that they only accept proprietary data formats. Researchers then make sure their data can be interpreted by these tools. The result is that images produced on different systems cannot be analyzed via the same mechanisms.

Another challenge for CTIIP with its goal of being to integrate integrating data from complimentary domains is the lack of a defined standard for pre-clinical and digital pathology data. This makes it Without a data standard for these domains, it is very difficult to share and leverage these kind of such data across studies and institutions.

NCI CBIIT has worked extensively for several years in the area of data standards for both clinical research and healthcare, working with the community and Standards Development Organizations (SDOs), such as the Clinical Data Interchange Standards Consortium (CDISC), Health Level 7 (HL7) and the International Organization for Standardization (ISO). From that work, Enterprise Vocabulary Services (EVS) and Cancer Data Standards Registry and Repository (caDSR) are harmonized with the Biomedical Research Integrated Domain Group (BRIDG), Study Data Tabulation Model (SDTM), and Health Level Seven® Reference Information Model HL7 RIM models. Standardized Case Report Forms (CRFs), including those for imaging, have also been created. The CBIIT project work provides the bioinformatics foundation for semantic interoperability in digital pathology and co-clinical trials integrated with clinical and patient demographic data and data contained in TCIA / and TCGA.

Within the three research domains that CTIIP intends to make available for integrative queries, only one, clinical imaging, has made some progress in terms of establishing a framework and standards for informatics solutions. Those standards include Annotation and Image Markup (AIM), which allow researchers to standardize annotations and markup for radiology and pathology images, and Digital Imaging and Communications in Medicine (DICOM), which is a standard for handling, storing, printing, and transmitting information in medical imaging. For pre-clinical imaging and digital pathology, there are no such standards that allow for the seamless viewing, integration, and analysis of disparate data sets to produce integrated views of the data, quantitative analysis, data integration, and research or clinical decision support systems.

As part of the DICOM Standards for Small Animal Imaging; Use of Informatics for Co-clinical Trials sub-project, the long-term goal is to generate DICOM-compliant images for small animal research. Micro AIM (µAIM) is currently in development to serve the unique needs of this domain.

 

The following table presents the data that the CTIIP team is integrating through various means. This integration relies on the expansion of software features and on the application of data standards, as described in subsequent sections of this document.

DomainData Set
Clinical ImagingThe Cancer Genome Atlas (TCGA) clinical and molecular data
Clinical ImagingThe Cancer Imaging Archive (TCIA) in vivo imaging data
Pre-ClinicalSmall animal models
Digital PathologycaMicroscope

 

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