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The purpose of this document is to document the technical face to face meeting details between NCI and Mayo.

Previous Face-to-Face (December 8 - 10, 2015)

November Face-to-Face (November 30 - December 2, 2016)

Meeting Details

NCI Shady Grove Campus
9609 Medical Center Drive
Rockville, MD 20850
http://www.cancer.gov/about-nci/visit

Rooms:

  • 30-Nov-2016
    • 8am - 1pm
    • 4W030
  • 30-Nov-2016
    • 1pm - 5pm
    • 5E030
  • 01-Dec-2016
    • 8am - 5pm
    • 3W030
  • 02-Dec-2016
    • 8am - 3pm
    • 1W030

Conference Details


 



Phone: 1-866-660-5416, code: 2398515

WebEx:

Day 1

https://cbiit.webex.com/cbiit/j.php?MTID=m3db8722f7a8f234ec028c2f97ecc8b05

Meeting number: 734 001 930

Meeting password: F2F_Day1

Day 2

https://cbiit.webex.com/cbiit/j.php?MTID=me6ef144b89128d776c1a399543ad1f35

Meeting number: 738 775 914

Meeting password: F2F_Day2

Day3

https://cbiit.webex.com/cbiit/j.php?MTID=m5608dcec1e7aca3955a8f3e9b42adf20

h

Meeting number: 738 582 780

Meeting password: F2F_Day3

Attendees

NameRoleAttend? (Y/N)

Wright, Larry

NIH/NCI  

 

Fragoso, Gilberto

NIH/NCI    

 

De Coronado, Sherri    

NIH/NCI   

 

Safran, Tracy

NIH/NCI   

 

Ong, Kim L

IS

 

Lucas, Jason R

IS

 

Bauer, Scott  

Mayo

 

Stancl, Craig

Mayo

 

Endle,  Cory

Mayo

 

Wynne, Robert    

NIH/NCI

 

Tran, Tin    

NIH/NCI [C]

 

Carlsen, Brian

(NIH/NCI) [C]

 

Wong, Joanne 

  

Kuntipuram, Kumar

  

Meeting Notes

...

References

2015 Face To Face Related JIRA items 

Agenda

 

  

Wednesday, November 30

 

 
TimeLocationTopics
Participants
Resources
9:00 AM - 10:00 AM
 
4W030
User Group Discussion
  • Team to share how they are using LexEVS and additional usage requirements they may have.

CTRP, caDSR, GDC

  • What components of LexEVS do you currently use?
    • LexEVS API

    • LexEVS Remote API

    • CTS2 RESTful services

  • Are there LexEVS services that you would like to use, but they don't meet your requirements?

  • Are there any other road blocks preventing you from using LexEVS?

  • What version of LexEVS are you currently using?

 

10:00 AM - 11:00 AM
  
4W030
RESTful API Discussion
  • Discuss requirements for continued development of REST services. This will include both CTS2 and separate REST-ful API.
  • Browser: Discuss requirements for remote API and CTS2 REST-ful API.
 
11:00 AM - 12:00 PM
 
4W030
Triple store/RDF Discussion
  • Discuss what
Triple
  • triple stores would be used for in parallel and in conjunction with LexEVS
  • Text searching
  • NCBO SPARQL white paper and it's implications
  • Searching on Roles (Gilberto, Kim)
 
 
Noon - 1:00 PM Lunch
All
 
1:00 PM - 2:00 PM
 
5E030
EVS Project Group Discussion (During regular call-in time)

  • Discuss specialized search use cases
EVS project meeting

  • User/content priorities for value set, mapping, and other services.
  • Specialized search and other capabilities for complex chemical names and genetic names.
  • Current capabilities and browser implementation
  • Possible expert system extension
 

2:00 PM - 3:00 PM
 
5E030
LexEVS Mapping Discussion

Determine requirements and propose solution for mapping.

  • User requirement: One terminology to many terminologies mapping.
  • Other topics: 
  • Current, conditional, external relationships
 

3:00 PM - 4:30 PM
 
5E030
Lucene Discussion
 

Propose additional features of Lucene to be used within LexEVS.

  • Discuss specialized search use cases.
  • Possible Lucene enhancements for coding scheme categorizations, auto complete aids, Lucene services.
4:30 PM - 5:00 PM5E030
Overflow/Additional Topics
 
  

Thursday, December 1


 


 
TimeLocationTopics
Participants
Resources
9:00 AM - 11:00 AM
 
3W030
Value Set management and workflow
  • Discuss requirements for value set version management and workflow management and supporting technology.
  • Rob to give a demo of their current workflow and the scripts they use.
Rob, Tracy
  • Discuss latest issues on PROD.
 
11:00 AM - 12:00 PM
  
3W030
Value Set and Mapping Data with Hierarchical structure Discussion
  • Determine requirements and propose options to hierarchical structure and mapping.
  • Discuss how VS could retain their multiple hierarchical structure that it came from.
  • Discuss what changes would be needed to CTS2 for this.
 
Noon - 1:00 PM Lunch
All
 
1:00 PM - 3:
00
30 PM
 A separate DEV environment for Mayo Team
3W030
NCI Systems Discussions
  • Nexus Deployment Discussion
    • Current status of LexEVS artifacts on NCI Nexus server
    • Discuss current technical challenges.
  • CI and Docker Status/Roadmap

  • Discuss how to set up a DEV environment with CentOS 7
  • Does this require a complete recompile of the OS?

      • Discuss the current status of the Docker scripts used to build/test LexEVS components.
      • Discuss NCI's current status and future plans to use Docker.
      • Discuss security challenges associated with NCI's environment and Docker.
    • Discuss a separate DEV environment for CI server deployment
    • Tech Stack Upgrades
      • Discuss DB upgrade:
        • MySQL 5.6 vs. MariaDB (10.1 Supported 2017.01)

    Sara, Shireesha, Phil

    Jacob and Systems team

     
      • Discuss CentOS 7 upgrade
    • Tier Deployment testing responsibilities
      • Mayo development team responsibilities
      • NCI development team responsibilities
    3:30
    3:00
    PM - 4:00 PM
     
    3W030
    FHIR and terminology services (CTS2)
    • Harold to provide update on CTS2 and FHIR.
    Harold
     
    4:00 PM - 5:00 PM
     
    3W030
    OWL Restrictions in LexGrid Model
    • Discuss approach and propose additional features
    .Discuss how to provide mapping into multiple coding schemes
    • .
    • Determine if there are
    lexevs
    • LexEVS model changes needed.
    • Loader considerations.
    • Additional problems and solutions
    Harold
    5:00 PM - 5:30 PM3W030
    Overflow/Additional Topics
     
      

    Friday, December 2

     
     
    TimeLocationTopics
    Participants
    Resources
    9:00 AM - 10:00 AM
     
    1W030
    LexEVS Admin Tooling

    Discuss current and future requirements.

    • GUI
      • Consider a web based tool.  A simple way to look at the data.
    • Command Line loader requirements
     
    • Other considerations
     

    10:00 AM - 12:00 PM
     
    1W030
    Prioritization and Debrief
    Future Architecture Discussion
    • Discuss OWL2, RRF, LexEVS, CTS2, Browser,
    etc and propose a roadmap 
    • and all previous topics
      • Discuss future architecture
    • Determine next steps/road map and priorities
     

    Noon - 1:00 PM Lunch
    All
     
    1:00 PM - 2:00 PM
     
    1W030
    Prioritization and Debrief

  • Prioritize
  • Determine next steps/roadmap
    (Continued if needed)

     

     

     

     

     

     

     

    ...