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Info
titleGet Support

For any general information about the application, application support, or to report a bug, contact Application Support.

Print the Guide
If you want to print a single page, refer to Printing a page.

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Property

Description

file.repository.dir

A directory on the system that hosts the Wildfly application server for storing uploaded files, for example, C:/apps/caNanoLab. 

Info
titleWritable Directory

Create this directory prior to starting the application, and ensure that the user who starts the Wildfly server has Write access. If working on Windows platform, use either double back slashes \\ or a single forward slash / as the file separator.

admin.email

The email address that receives requests for new user accounts, for example, the NCI CBIIT application support email for the NCI CBIIT installation, for example, ncicbiit@mail.nih.gov.

ldap.authentication.enabled

A Boolean flag to indicate whether or not to use LDAP for user authentication. caNanoLab 2.1.1 and beyond does not support LDAP authentication. Set this to false.

database.server

The name of the server hosting the database, for example, localhost.

database.port

The database port number, for example, 3306.

database.user

The database user name used in the caNanoLab application, for example, cananolab_app.

database.password

The password for the database that the user specified above, for example, go!234.

database.system.user

The system database user name with privileges to create a database, create tables, and grant user accesses to a database, for example, root.

database.system.password

The password for the system database that the user specified above, for example, rootpass.

jboss.server.dir

The Wildfly server directory, for example:

C:/apps/wildfly-8.2.0.Final/standalone

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The migration of access control data has been implemented as a series of ReST services. These services must be invoked in the following order for all access data to be migrated from CSM to Spring Security.

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Action

1

Migrates all user accounts and grants them all the default Public role and Curator role to curators in CSM.

https://cananolab.nci.nih.gov/caNanoLab/rest/datamigration/migrateuseraccounts

2 

Migrates all access for samples - RWD access for owner and curator, R access for researcher, RWD and R access for specific users.

https://cananolab.nci.nih.gov/caNanoLab/rest/datamigration/migratesampleaccess

3 

Migrates all access for protocols - RWD access for owner and curator, R access for researcher, RWD and R access for specific users.

https://cananolab.nci.nih.gov/caNanoLab/rest/datamigration/migrateprotocolaccess

4 

Migrates all access for publications - RWD access for owner and curator, R access for researcher, RWD and R access for specific users.

https://cananolab.nci.nih.gov/caNanoLab/rest/datamigration/migratepublicationaccess

5 

Adds all charaterizations to the ACL tables and sets them up with the corresponding sample as parent objects. This sets up the characterizations to inherit the access of their sample.

https://cananolab.nci.nih.gov/caNanoLab/rest/datamigration/migratecharaccess

6 

Migrates all organizations to ACL tables and grant public access. Also, sets up inheritance of access for POCs of organizations.

https://cananolab.nci.nih.gov/caNanoLab/rest/datamigration/migratesamplesourceaccess

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Step 2. caNanoLab installation instructions to upgrade to 2.2

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Open the URL, http://<APP_SERVER_URL>/caNanoLab/, for example,  http://localhost:8080/caNanoLab . The Welcome/Login page displays.

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