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Search for Samples by Publication
Once a publication is saved and associated with one or more specific samples, when the sample is opened in caNanoLab, the associated publications are listed on the Publication All tab. Where appropriate, the publication list includes hyperlinks so you can open the publication(s).Info title Publications menu option If you work from the Publications menu option, you can associate multiple samples with a publication. If you add publications to an open sample from the Navigation Tree, you can use the copy feature to associate the publication with other samples.
You can also perform the following functions with a protocol.
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The Create Publication function allows you to identify a publication and associate it with one or more samples. To define a sample publication
When no sample is selected
- Click the Publications caNanoLab menu option. On the Manage Publication home page, click the Create a New Publication link. This opens the Create Publication page. Continue with step #2 below.
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If you add a publication from the Publications menu option, you can associate multiple samples with a publication. If you work from an open sample in the Navigation Tree, you can copy a characterization to associate the publication with other samples. |
The Create Publication function allows you to identify a publication and associate it with one or more samples. To define a sample publication
When no sample is selected
- Click the Publications and click Create a New Publication. Continue to step 2.
From within an open sample Anchor Add Publication from Navigation Tree Add Publication Anchor Add Publication from Navigation Tree Add Publication from Navigation Tree
- Search for a sample, click Edit in the search results, and click Publication in the Navigation Tree. Continue to step 2.Click Publication from the Navigation Tree when a sample is open.
- Click the Add button that corresponds to the appropriate publication type you plan to add.
From this point on, the process is very similar. Variations in the steps are noted in the following table.The following table lists and describes each field. Select or enter the appropriate information in the text fields and drop-down lists.
Tip title Other Tip title Other options By default, all fields are blank.
Include Page Other options Other options Fields may change, depending upon your launching point and your selection of Publication Type. Asterisks indicate required fields.
Sample Publication Criteria Description Publication Type*
Include Page Publication type Publication type Publication Status* Include Page Publication status Publication status Title*
Enter the title. (See PubMed ID description for how to auto-populate this field)
Year of Publication Enter the year that the publication was published. Authors
To add an author to the publication, click Add. On the pop-up, enter a First Name, Last Name, and Initials of the author. Click Cancel or click Save to save the author to the Publication.
To edit an author, click Edit, make changes to the name, and click Save. The changes are saved.
To remove an author, from the Submit Publication page, click Edit next to the author's name, and click Remove on the pop-up.
Keywords
Enter a term that can be used in a search query to find the publication. Enter one keyword on each line.
Description Enter the description for the publication.
Research Category Include Page Research category Research category Upload
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Enter File URLClick Browse to navigate to the publication to be associated with the sample, or enter the URL where the publication is located.
Sample Name
There are two options to add samples to a publication:
Enter one sample name per line in the Sample Name box.
OR
Click Search Samples and a list of samples appears in a list box. Click a sample name or Ctrl-click or Shift-click to select more than one. Click Select, and the selected samples are added to the Sample Name box.
Access to the Publication For more information, see Sharing a Publication with a User or Group or Making the Publication Public. To clear the fields and start again, click Reset.
Once you enter the appropriate information on the form, click Save.
Info title My Workspace Once you submit a publication, it is listed on the My Workspace page where you can manage all your submitted publication, and view any publications that a user has shared with you. For more information, see Using My Workspace.
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You can also perform a keyword search using the Search box in the upper-right of the caNanoLab window to search across protocols, samples, and publications. |
Click the Publications.
Click caNanoLab menu option. On the Manage Publication page, click the Search Existing Publications link. This opens the Search Publications form.
Tip When defining search criteria, there are no required fields. You can add only those parameters that you consider essential to the search. Add an asterisk for searching wildcards. If you do not define any search criteria, caNanoLab will list returns all publications in the search results.
The following table lists and describes the fields. Select or enter the appropriate information in the text fields and drop-down lists. Asterisks indicate required fields.From the Search Publications page, fill in the following information as needed.
Publication Search Options Description Publication Type
Include Page Publication type Publication type Research Category
Include Page Research category Research category PubMed ID
Enter the PubMed ID, if known.
Include Page PubMed ID PubMed ID Enter the name of the digital object ID, if known.
Publication Title
Enter text for the title of a publication. Select Contains (for search using partial text) or Equals (for exact text search).
Authors
Enter the name(s) of the authors. Enter one author per line.
Keywords
Enter a logical term that can be used to find the publication. Enter one term per line.
Sample Name
Enter text for the name of a sample. Select Contains (for search using partial text) or Equals (for exact text search).
Composition
Nanomaterial Entity
Select from the drop-down list the nanoparticle category to which the sample targeted by the search belongs. Example: Dendrimer
Functionalizing Entity
Select from the drop-down list the functionalizing category to which the sample targeted by the search belongs.
Function
Include Page Function type Function type - To clear the form and start again, click Reset.
To launch the search, click Click Search.
Tip If you click Search without defining any parameters, all of the caNanoLab sample publications display are returned in the search results.
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Publications Search Results display sorted by Creation date and are the column headings appropriate for the publication(s) for which you searched. The following fields are listed in the search resultsDate with information appropriate for the publication type.
The following table lists and describes the Publications Search Results columns.
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To return to the Search page, click the Back ( ) button not the Browser button. |
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To search for publications associated with one or more samples
- Click the Publications.
- Click caNanoLab menu option. On the Manage Publication page, click the Search for Samples by Publication link. This opens
From the Sample Search by Publications form
.Specify , specify the Type of sample ID, PubMed or DOI.
Enter the ID number.
To clear the fields, click Reset.
Click Search.
To perform the search, click Search.
Tip If you click Search without defining any parametersdo not specify search criteria, all of the caNanoLab publications display are returned in the search results.
Sample by Publication Search Results
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The following table lists
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and describes the Sample Information by Publication Search Results columns.
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To return to the Search page, click the Back ( ) button not the Browser button. |
Publications Search Results Columns | Description |
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Publication REF | Click the hyperlink to open the PubMed.gov page for that Publication. |
Authors | The author(s) of the publication. |
Title | The title of the publication. |
Sample Composition | Click the link to open the caNanoLab Sample Composition form. |
Sample Characterization | Click the link to the open the caNanoLab Sample Characterization form. |
Journal | The journal where the publication was published. |
Year | The year that the journal was published. |
Vol(lss)Pg | The volume and page number in the journal where the publication was published. |
For any entry, click on the hyperlink in the Title column (first) to open the associated file.
Editing a Publication
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You can access the Update Publication page after logging into caNanoLab or you can access publicly-available sample publication results from the Login page. You can edit a publication only if you are logged in as a curator. |
The Publication Update page opens when you click the Edit link corresponding to a publication listed in Publication Search Results. The page displays all of the information for a Publication that was entered when the Publication was created in caNanoLab (Submitting a Protocol). With appropriate permissions, you can edit information.
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Publication criteria may change, depending upon the Publication Type of the selection. |
The following table lists and describes the fields. An asterisk indicates a required field. Click Update when you are done editing the Protocol. To disregard the changes, click Reset.
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Publication Type*
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Publication Status*
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PubMed ID
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Appropriate DOI.
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Title*
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Enter text for the title of a publication. Select Contains (for search using partial text) or Equals (for exact text search).
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Journal
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Journal in which publication occurs.
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Year of Publication
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Year of the publication.
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Volume
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Volume of the publication
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Start/End Page
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Page range for the publication
To update a publication
- Perform a publication search.
- Click Edit in the search results.
From Public Update edit the following information as needed. An asterisk indicates a required field. Click Update when you are done editing the Publication.
Publication Criteria Description
Publication Type*
Include Page Publication type Publication type Tip The criteria displayed varies depending on the Publication Type that you select.
Publication Status*
Include Page Publication status Publication status PubMed ID
PubMed ID (can be a hyperlink).
Include Page PubMed ID PubMed ID Appropriate DOI.
Title*
Enter text for the title of a publication. Select Contains (for search using partial text) or Equals (for exact text search).
Journal
Journal in which publication occurs.
Year of Publication
Year of the publication.
Volume
Volume of the publication
Start/End Page
Page range for the publication
Authors
To add an author to the publication, click Add. On the pop-up,
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Authors
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enter a First Name, Last Name, and Initials of the author. Click Cancel or click Save to save the author to the Publication.
To edit an author, click Edit, make changes to the name, and click Save. The changes are saved.
To remove an author, from the Submit Publication page, click Edit next to the author's name, and click Remove on the pop-up.
Keywords
Enter a logical term that can be used to find the publication. Enter one term per line.
Description
Enter a description for the publication.
Research Category
Include Page Research category Research category Upload
or
Enter File URLClick Browse to navigate to the publication to be associated with the sample, or enter the URL where the publication is located.
Sample Name
There are two options to add samples to a publication:
Enter one sample name per line in the Sample Name box.
OR
Click Search Samples and a list of samples
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appears in a list box. Click a sample name or Ctrl-click or Shift-click to select more than one. Click Select, and the selected samples are added to the Sample Name box.
Access to the Publication
For more information, see Sharing a Publication with a User or Group or Making the Publication Public.
Deleting a Publication
Deleting a publication removes the publication from the caNanoLab database, which is executed behind the scenes at a scheduled time.
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If you do not see the option described here, you do not have appropriate security permissions. |
To delete a publication
- Perform a publication search.
- Click Edit in the search results.
- From the Update Publication page, click Delete in the lower-left corner of the window.
- Confirm the deletion.
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Access to the Publication
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Deleting a Publication
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This action deletes the publication from the caNanoLab database, executed behind the scenes at a scheduled time. |
To delete a publication, perform a publication search, find the publication that you want to delete, and click the Edit link in the first column of the the Publication Search Results page. The Update Publication page opens. From the Update Publication page, click the Delete button in the lower-left corner of the window. Confirm the deletion.
Copying a Publication to Samples
When you are in the process of adding a publication to a sample, on the Publication page you can copy that publication to other caNanoLab samples that have the same point of contact.
- From within an open sample, click Publication in the Navigation Tree.
- In the Copy text box, select one or more additional samples with which you want the publication associated.
- Click Submit. The publication is copied to other samples you selected.
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Copying a Publication
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to Samples
To delete a publication for a selected sample
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This only deletes the publication(s) for the selected sample. If it (they) has (have) been copied for other particles, it will not be deleted. |
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If you do not see the option described here, you do not have appropriate security permissions. |
To copy a publication to a sample with the same point of contact
- Perform a publication search.
- Click Edit in the search results.
- Click Publication in the Navigation Tree.
- In the Copy text box, select one or more additional samples to associate with the publication.
- Click Submit.
The publication is copied to the sample(s) you selected.
Deleting a Publication from a Sample
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If you do not see the option described here, you do not have appropriate security permissions. |
Deleting a publication from a sample
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removes its association with the open sample. The publication remains in the database
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and is available for other samples.
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To delete a publication from a selected sample
- Click Sample and Search Existing Samples.
- Click Edit in the search results.
- In the Navigation Tree, click Publication. The All tab displays the summary of any publications associated with the sample.
- Click Edit at the right of the section you want to delete.
- From the Publication page, click Delete at the bottom left of the page.
- Confirm the deletion.
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AnchorBookmarkPublication BookmarkPublication
Bookmarking a Publication to My Favorites
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BookmarkPublication |
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