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Integrative Genomics Viewer UCSC Xena Single Cell Genome Viewer (Profiling and visualization of tumor genomes on a single-cell level) - Sparse genomic profiling of multiple individual cancer cells is a tool of choice for characterization of genetic heterogeneity and clonal structure in tumors. I will outline a computational and visualization workflow we have developed for this purpose and provide evidence for diagnostic utility of single-cell genomics in prostate cancer |
BIOS:
Jim Robinson is a Principal Software Engineer at the University of California, San Diego. His work over the past 20 years has focused on the design and development of bioinformatics and visualization software for researchers and clinicians in the biomedical community. Jim has been the architect and lead developer of the Integrative Genomics Viewer (IGV) since its inception.
Helga Thorvaldsdottir is a Software Engineering Manager at the Broad Institute. Helga holds an MS in Computer Science from the University of North Carolina at Chapel Hill, where she focused on interactive 3D computer graphics. After a decade developing computer graphics software for hardware companies in Silicon Valley, Helga turned her attention to software development for biomedical researchers, first at Iceland Genomics Corporation and then the Broad Institute. Helga has been a key member of the team that develops the Integrative Genomics Viewer (IGV) since before its initial release in 2008.
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- Integrative Genomics Viewer - Jim Robinson, University of California, San Diego and Helga Thorvaldsdottir, Broad Institute, UC San Diego
- UCSC Xena - Mary Goldman, UC Santa Cruz, Design & Usability Engineer, Xena
- Single Cell Genome Viewer - Alexander Krasnitz, Ph.D., Associate Professor, Cold Spring Harbor National Lab
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