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  1. mkdir /usr/local/bioconductor/logs
  2. Edit /usr/local/activemq/conf/log4j.properties
    1. Change "log4j.rootLogger=INFO, stdout" to "log4j.rootLogger=INFO, out"
    2. Change "log4j.appender.out.file=${activemq.home}/data/activemq.log" to "log4j.appender.out.file=/usr/local/bioconductor/logs/activemq.log"
  3. cd /usr/local/bioconductor/logs
  4. ln -s /usr/local/bioconductor/caDNAcopy/nohup.out ./rworker-dnacopy.log
  5. ln -s /usr/local/bioconductor/caCGHcall/nohup.out ./rworker-cghcall.log
  6. ln -s $CATALINA_HOME/logs/catalina.out ./tomcat.log

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