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caMicroscope is a tool to view, annotate, and analyze whole-slide, biomedical images. It consists of a set of web services to manage manages digital pathology images, associated clinical and imaging metadata, and human/machine generated annotations and markups. It also allows you to view and analyze whole-slide and nuclear segmentations of images. caMicroscope hosts whole-slide, cancer tissue images for review by pathologists.

FeatureScape provides interactive representations of feature landscapes. Use FeatureScape to explore slide-level imaging features generated by analysis of whole slide tissue images to QuIP.

 

This guide explains how to do the following tasks in caMicroscope:

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  1. Use the Chrome browser to navigate to https://wolf.cci.emory.edu/vtr_pending.  
    The Sign In page appears.
  2. Use your Google credentials to sign in to caMicroscope.
    The caMicroscope site appears.
  3. Select which database of images you want to view by clicking either the large slide image or the More button. Databases include Breast Cancer Genomic Pilot, Virtual Tissue Repository (VTR) Pending, and Pancreatic Ductal Adenocarcinoma (PDAC).
    A table appears that lists all whole-slide images for the selected database that you are authorized to view.
  4. In the table, click the Open button for any row.
    The slide opens in caMicroscope.

    Note

    To select a different image, click the Back button in your browser to return to the table.

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