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This document provides instructions for installing caIntegrator Bioconductor.

Topics in this chapter include:

Table of Contents
minLevel2

Overview

caIntegrator provides the capability to perform level 3 copy number analysis using either caDNAcopy or caCGHcall.  Both of these tools are part of the Bioconductor suite and are implemented as caGrid services wrapping the R Bioconductor code.  One or both of these tools can be installed either on a separate server from caIntegrator or on the same server.  Be aware that the R processing associated with caDNAcopy and/or caCGHcall can be very CPU and memory intensive.  Also, the current installation instructions only support installation on Linux platforms.  Recommended configurations are given at the bottom.

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