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caIntegrator provides the capability to perform level 3 Should "level 3" be defined? copy number analysis using either caDNAcopy or caCGHcall. Both of these tools are part of the Bioconductor suite and are implemented as caGrid services wrapping the R Bioconductor code. One or both of these tools can be installed either on a separate server from caIntegrator or on the same server. .What is this? It keeps appearing in the markup.
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Be aware that the R processing associated with caDNAcopy and/or caCGHcall can be very CPU and memory intensive. |
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The caIntegrator Bioconductor installation also depends on several other packages that may not be installed on your system. Summaries of these packages and how to install them follow.
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This section installs the caDNAcopy grid in three pieces: base code, R web service, and caGrid service. You may skip this section if you are only using caCGHcall.
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This section installs the caCGHcall grid service in three pieces: base code, R web service, and caGrid service. You may skip this section if you are only using caDNAcopy.
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