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As per Bioconductor Installation Guide page 11: Do you have a link for this?

  1. Start up Tomcat (shutdown if already running)
    • $CATALINA_HOME/bin/startup.sh
  2. Start up ActiveMQ
    • $JMS_HOME/bin/activemq &
  3. Start up R worker for caDNAcopy (skip if only using caDNAcopy)
    • cd /usr/local/bioconductor/caDNAcopy
    • nohup ant start-worker &
  4. Start up R worker for caCGHcall (skip if only using caCGHcall)
    • cd /usr/local/bioconductor/caCGHcall
    • nohup ant start-worker &

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