Page History

...

1. $R_HOME/bin/R
2. At the R prompts:
   1. source("http://www.bioconductor.org/biocLite.R")
   2. biocLite()
   3. biocLite("RCurl")
   4. biocLite("SJava")
   5. biocLite("RWebServices")
   6. biocLite("RUnit")
   7. biocLite("DNAcopy")
   8. q()
3. Build SJava links missed by install:
   1. cd $R_HOME/lib64/R/library/SJava/libs
   2. ln -s SJava.so libRInterpreter.so
   3. ln -s SJava.so libSJava.so
4. Build and test SJava/RWebServices installation (as per Bioconductor Installation Guide, page 10)described in Customizing and Deploying Web and Grid Services.
   1. $R_HOME/bin/R
   2. At the R prompts:
      1. library(RWebServices)
      2. unpackAntScript("/tmp/rservices")
      3. q()
   3. cd /tmp/rservices
   4. ant recompile-sjava
   5. ant basic-prop
      • Look for any errors.
   6. ant rservices-test
      • This step is optional.

...