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Date

Attendees


  • Todd Todd, Heather, Jeff, Christina, Paula, Phillip, Debbie, Anju, Cheryl, Amy, Erika

  • Regrets: Melissa


Goals

Discussion items

ItemWhoNotes
Genomics Best PracticesWill/Heather/Dawn/Allison
  • About 7-8 people have given feedback
    • Will to send a final version by Friday
  • Should it be published somewhere else?
    • Publishable white paper?
  • Would be a valuable publication
    • Useful as a resource for the broader community
    • Would likely require some additional work
    • Open access vet journal?
  • Could be enhanced by letters to Vet Path or other journals to increase visibility
  • Perhaps in more than one journal?  Paula has experience in seeing this done
    • Requires buy-in from editors
  • NCI communications
  • Clinical
    • Beyond flow, picture isn't clear
    • IHC also likely to be murky
    • Next plans likely influenced by available data
Data Submission UpdateTodd
  • NCATS COP01 - Update in late March
    • All 150 bam and bai files, clinical, gene expression matrix
  • UBC01 - Embargo lifts late March
  • UBC02 - Embargo lifts mid/late April
  • OAS01 - Data submission done mid April
  • MCG01 - Data submission done late spring/early summer
  • CCL01 - Data submission done late spring/early summmersummer
ICDC Site updateTodd
  • Account migration this week
  • 2 day downtime for file migration (28TB of files)
OtherTodd
  • GDC will not have any ctDNA studies
    • Instead will be focusing in single cell RNAseq and ATAC seq (Assay for Transposable Accessible Chromatin)
    • Can there be notations that ctDNA is available directly from the submitter?

Action items

  •  Investigate direct connection to Redcap
  •