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Topic: caArray Usage
Release: caArray 2.4.0
Date entered: January 01/18, /2011
Question
How can I upload and store QC data in caArray?
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The QC data as mentioned in the question can be added as Comment\[\] columns in your MAGE-TAB SDRF. Ideally, they would be Characteristics associated with the Hybridization Name or Scan Name column. Unfortunately, the MAGE-TAB specification does not allow Characteristic\[\] columns for Hybridization Name or Scan Name. We recommend that you include these QC annotations as Comment\[\] columns following either the Hybridization Name or Scan Name column. |
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One thing to keep in mind is that caArray does not currently parse the contents of Comment \[\] columns and store the values in the database. But these annotations would be captured in the SDRF file itself, which is stored as is by caArray.
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