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Page History
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The NCI instance of the caIntegrator database is now retired. For details about the retirement, see the caIntegrator Retirement Announcement. |
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Tool Overview
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web portals to conduct integrative research, |
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with no programming experience required. These portals bring together heterogeneous clinical, microarray and medical imaging data to enrich multidisciplinary research. |
Using caIntegrator, researchers can execute, save and share queries to identify and collect many types of data, combining clinical information with genetic and genomic data to enable multidimensional analysis.
caIntegrator uses caGrid analytical services such as GenePattern and BioConductor to perform analysis on the integrated study data, including clinical survival data. caIntegrator leverages the Cancer Data Standards Registry and Repository (caDSR) to map experimental data to well-defined datatypes and uses caGrid and Java client APIs to access data from applications such as caArray and the National Biomedical Imaging Archive (NBIA). caIntegrator is also integrated with caBIO to perform queries on genes and pathways. caIntegrator has visualization capabilities for copyNumber and Expression data. It integrates well with Heatmap viewer and Integrative Genomics Viewer (IGV).
Installation and Downloads
Downloads and Installation Instructions
Version 1.4.3
- caIntegrator v.1.4.3 Install Zip File
- caIntegrator v.1.4.3 Upgrade Zip File
- caIntegrator v.1.4.3 GUI Distribution Jar File
- caIntegrator 1.4.3 Release Notes
- caIntegrator 1.4 or 1.4.x Local Installation Guide
Version 1.4.2
- caIntegrator v1.4.2 Install Zip File
- caIntegrator v.1.4.2 Upgrade Zip File
- caIntegrator v.1.4.2 GUI Distribution Jar File
- caIntegrator 1.4.2 Release Notes
- caIntegrator 1.4 or 1.4.x Local Installation Guide
Version 1.4
- caIntegrator v1.4 Release Download
- caIntegrator 1.4 Release Notes
- caIntegrator 1.4 or 1.4.x
- caIntegrator Public Server*: A public caIntegrator hosted by NCI is free to community. A free account will be issued upon registration.
- Download, Install or Upgrade caIntegrator
- caIntegrator v1.3.1 Release Download
- caIntegrator Demo Data Download and Instructions for Use
- caIntegrator 1.4 Local Installation Guide; caIntegrator 1.3 Local Installation Guide
System Requirements
caIntegrator is an open-source, web-based J2EE Java application employing Spring, Struts 2 and Hibernate technologies. Full installation requires installation of JBoss 4.0.5; MySQL 5.0.45; ANT (Apache); JDK 1.5.
Forum and Support for caIntegrator
GitHub Repositories
- caIntegrator GitHub Repository
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Multiexcerpt include MultiExcerptName ExitDisclaimer nopanel true PageWithExcerpt wikicontent:Exit Disclaimer to Include - caIntegrator data GitHub Repository
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Support for caIntegrator
You can contact the NCI CBIIT Application Support if you have any questions or concerns.
- caIntegrator Project Management
- caIntegrator GForge Project Archives
- End User Forum
- Developer Forum
- caIntegrator users Listserv
- Report a Defect or Request a Feature at caIntegrator GForge Community Tracker
- Application Support
Documentation
Refer to caIntegrator Documentation
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What's New
- For news and events, visit What's new for caIntegrator.
- Twenty-three (23) citations were added to caIntegrator Citations.
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Presentations, Demos and Other Materials
caIntegrator
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Knowledge Base
- To find
caIntegrator Knowledge Base
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- the answers to the most frequently asked questions
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- caIntegrator work, refer to caIntegrator FAQ and In-depth Articles.
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- do not know if caIntegrator is for you, refer to the caIntegrator Case Studies to see examples of how caIntegrator could be used in different scenarios.
Each institution could have its own unique setting and requirements. Visit caIntegrator Success Stories and share your success or even not so successful a story here. Your input will help others.
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- For a list of articles about caIntegrator, refer to the caIntegrator Citations.
Open-source
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Development
Link to caIntegrator Open Development Code Base
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Integration with
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Other Tools - caArray
caIntegrator currently only works with caArray 2.3.x and 2.4.x. Therefore, please make sure that the version of the caArray instance from which caInt2 retrieves data from is 2.3.0 and above.
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