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The NCI instance of the caIntegrator database is now retired. For details about the retirement, see the caIntegrator Retirement Announcement. |
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Tool Overview
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Using caIntegrator, researchers can execute, save and share queries to identify and collect many types of data, combining clinical information with genetic and genomic data to enable multidimensional analysis.
caIntegrator uses caGrid analytical services such as GenePattern and BioConductor to perform analysis on the integrated study data, including clinical survival data. caIntegrator leverages the Cancer Data Standards Registry and Repository (caDSR) to map experimental data to well-defined datatypes and uses caGrid and Java client APIs to access data from applications such as caArray and the National Biomedical Imaging Archive (NBIA). caIntegrator is also integrated with caBIO to perform queries on genes and pathways. caIntegrator has visualization capabilities for copyNumber and Expression data. It integrates well with Heatmap viewer and Integrative Genomics Viewer (IGV).
Installation and Downloads
Downloads and Installation Instructions
Version 1.4.3
- caIntegrator v.1.4.3 Install Zip File
- caIntegrator v.1.4.3 Upgrade Zip File
- caIntegrator v.1.4.3 GUI Distribution Jar File
- caIntegrator 1.4.3 Release Notes
- caIntegrator 1.4 or 1.4.x Local Installation Guide
Version 1.4.2
- caIntegrator v1.4.2 Install Zip File
- caIntegrator v.1.4.2 Upgrade Zip File
- caIntegrator v.1.4.2 GUI Distribution Jar File
- caIntegrator 1.4.2 Release Notes
- caIntegrator 1.4 or 1.4.x Local Installation Guide
Version 1.4
- caIntegrator v1.4 Release Download
- caIntegrator 1.4 Release Notes
- caIntegrator 1.4 or 1.4.x Local Installation Guide
System Requirements
caIntegrator is an open-source, web-based J2EE Java application employing Spring, Struts 2 and Hibernate technologies. Full installation requires installation of JBoss 4.0.5; MySQL 5.0.45; ANT (Apache); JDK 1.5.
GitHub Repositories
- caIntegrator GitHub Repository
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Support for caIntegrator
You can contact the NCI CBIIT Application Support if you have any questions or concerns.
- caIntegrator Project Management
- caIntegrator GForge Project Archives
- End User Forum
- Developer Forum
- caIntegrator users Listserv
Documentation
Refer to caIntegrator Documentation.
What's New
- For news and events, visit What's new for caIntegrator.
- Twenty-three (23) citations were added to caIntegrator Citations.
caIntegrator Knowledge Base
- To find the answers to the most frequently asked questions and understand how caIntegrator work, refer to caIntegrator FAQ and In-depth Articles.
- If you still do not know if caIntegrator is for you, refer to the caIntegrator Case Studies to see examples of how caIntegrator could be used in different scenarios.
- For a list of articles about caIntegrator, refer to the caIntegrator Citations.
Open-source Development
Link to caIntegrator Open Development Code Base
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Integration with Other Tools - caArray
caIntegrator currently only works with caArray 2.3.x and 2.4.x. Therefore, please make sure that the version of the caArray instance from which caInt2 retrieves data from is 2.3.0 and above.
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