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Activities completed this month

  • MIDRC is up and running and challenge details are being ironed out: https://midrc-medici-competitions.eastus.cloudapp.azure.com/
    • Training Phase underway and participants are submitting the provided template to practice submitting docker images.
  • CodaLab (Open Source Team):
    • Wrote some notes for them regarding various demos we get from Tyler Thomas, a contract worker for CodaLab.
  • Federated learning challenge:
    • Temp site is up to furnish challenge data: https://medici-codalab-main.eastus.cloudapp.azure.com/competitions/24
    • Their security scans said python2 and python3 have vulnerabilities. They are asking me to not use these libraries or delete the files from these libraries:
      • ACR requested the scan of MedICI docker containers for use in their system.
    • New Infrastructure Diagram:
    • Image preview
  • True-CT SIRPRISE Challenge
    • There were some upload data issues where participants were getting permission denied when trying to sign into their sftp file shares.
    • Otherwise things are good and we have pushed the phase to submit back to May 31st.
  • DL-SPARSE Challenge
    • We are in the validation phase and data for that phase has been updated:
      • ground truth
      •  test set has been added to sftp server
  • SIRPRISE Challenge
    • There may be an email bug so working with Diane to iron that out. UPDATE: I believe we fixed this. Sometimes though CodaLab is blocked and emails are sent to spam. Not sure how to deal with that yet.
    • Challenge is over on the 23rd due to supply issues of some chemicals. Some participants are still making submissions and Diane Alvarez is tending to them. She seems to have it handled.
Planned for next month
  • MIDRC Challenge 0
    • UPDATE (3/31/2022): Infrastructure is built and now we are editing the template challenge to be the real challenge. 
    • UPDATE (4/29/2022): Training phase is underway and participants are testing submissions.
  • Federated Learning Challenge: 
    • Still need VPN access to environment.
    • Kendall Schmidt (from ACR) and Holger Roth (from NVIDIA) are creating a bash script that kicks off a participant container. 
    • I will be in charge of orchestrating the start of that script from the MedICI website.
  • CodaLab (Open Source Team): 
    • I need to draft a SOW to work with the team and become a contract worker with them
    • Launch local version of CodaBench and see if we can get some old challenges to run.

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