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  1. Go to the CBIIT caIntegrator login page or use the URL provided by your System Administrator for the caIntegrator instance at your institution.
  2. Click the Register Now hypertext link, under the caIntegrator login section in the lower center of the page. This opens the account registration form.
  3. Enter the appropriate information. Fields with an asterisk are required.

    Security Information

    Entry

    Do you have an LDAP account?

    An LDAP account is a user profile you may have with your institution or CBIIT. If you answer Yes, enter your username and password. This allows caIntegrator to verify that your credentials are correct.

    If caIntegrator does not validate your LDAP profile, you are asked to reenter your credentials. You can choose to answer No. In this case, the System Administrator will manually ensure that you do not get a duplicate LDAP account during provisioning. You can then cancel the action or talk with your System Administrator about the problem.

    If you select No (you do not have an LDAP account), the text boxes for entering the LDAP account information disappear. You must indicate the role you would like to be assigned in caIntegrator, and continue entering the appropriate information in the Account Details section.

    Note: After you submit your registration request, you can continue to use caIntegrator without an account to browse and search available data while your account is verified and activated.

    Username

    Enter your LDAP user name.

    LDAP Password

    Enter your password. Your password is case-sensitive.

    Requested role(s)

    Select one or more of the roles, described in this table:

    Include Page
    caIntegrator:caIntegrator roles
    caIntegrator:caIntegrator roles
    .

  4. Enter your account details. Field names followed by asterisks are required.
  5. Click Submit Registration Request. Click Cancel to terminate the registration. A Registration Request confirmation page appears if you submit the request.

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Sidebar Option

Function

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[Study Name]

When you log in, one study displays in the left sidebar by default. Any study that you select in the My Studies drop-down list in the upper right of the page replaces this default selection.

]]></ac:plain-text-body></ac:structured-macro>

Home

Click this to return to the home page for the selected study.

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Search [Study Name]

Click this option to open the Search [Study Name] page from which you can launch queries into your selected study. For more information, see [3 - Searching a caIntegrator Study].

]]></ac:plain-text-body></ac:structured-macro>

Study Data

Click Saved Queries > My Queries to open the list of previous queries you saved. Click any item in the list to open the saved query, which displays on the Criteria, Columns and Sorting tabs. From those tabs, you can modify criteria and/or launch the query again. For more information, see Saving a Query.
Click Saved Lists > Global Lists or > My Lists to open gene lists that have been saved for a study. From any page in caIntegrator that shows such a group, you can save a such a list of genes to be used for searches or analyses. See Creating a Gene or Subject List.
Click Saved Copy Number Analysis to open an Edit GISTIC Analysis page. You can review genes retrieved from the analysis or, with appropriate permissions, you can edit the metadata for the analysis. See Editing a GISTICAnalysis.

Analysis Tools

Click any of the listed options to open a page where you can launch an analysis of the data in the selected study.

Study Management

Click either of the listed options to manage the selected study through editing or deleting it or by creating a new study.

Application Management

Click Manage Platforms to identify, add or remove platforms that caIntegrator supports. For more information, see Managing Platforms.

caIntegrator Menu

  • Click Support to view contact information for Application Support.
  • Click User Guide to open the caIntegrator v.1.3 User's Guide in wiki format.

Help

Click the Help icon at the top of each page to open a context-sensitive topic. The help page displays information (from this user's guide) that corresponds to the page from which help was opened.

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