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– Technical replicates of supplemental single-sample-per-file expression data are not calculated in caIntegrator. Technical replicates must each have a unique sample name as displayed in column two of the six-column mapping file to be mapped. If the sample names in column two are repeated for a given subject only the last sample in the mapping file will be mapped. See: https://tracker.nci.nih.gov/browse/CAINT-984^{Image Removed}

– When deploying a study with an image data source, caIntegrator may not be able to retrieve more than 1000 images per image series from NBIA. See https://tracker.nci.nih.gov/browse/CAINT-1000^{Image Removed}

– Deployment of large studies can cause java.lang.StackOverflowError errors. After installation, in the JBOSS installation directory, make the following change:
-XX:ThreadStackSize=512

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