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RRF File Name | RRF Column Name | RRF Definition | NCI Meta only | LexGrid Model Element | comments Comments | ||||
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Entities | |||||||||
MRCONSO.RRF | CODE | Unique Identifier or code for string in source | NA | Entity.entityCode | No comments | ||||
MRCONSO.RRF | CUI | Unique identifier for Entity | x | Entity.entityCode |
| No comments | |||
MRCONSO.RRF | CUI | Unique identifier for Entity | NA |
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| Entity.isActive | Hardcoded in parameter as true. |
MRCONSO.RRF |
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| CUI | Unique identifier for Entity | NA | Entity.status | Hard coded as constant in java file as "Active" | ||
MRCONSO.RRF |
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| CUI | Unique identifier for Entity | NA | Entity.isAnonymous | Hardcoded in parameter as false. | ||
MRCONSO.RRF | STR | String | NA | Entity.entityDescription |
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No comments | |||||||||
MRCONSO.RRF | STR | String | NA | Entity.entityDescription | No comments | ||||
MRCONSO.RRF | STR | String | NA | Entity.entityDescription | No comments | ||||
MRCONSO.RRF | STR | String | NA |
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| Entity.Property.Format | Hard coded as constant in java file as "text/plain" or null |
MRCONSO.RRF | STR | String | NA | Entity.Property.propertyName | May be hard coded as constant in java file as one of several properties. | ||||
MRCONSO.RRF | STR | String | NA | Entity.Property.usageContext |
| No comments | |||
MRCONSO.RRF | STR | String | NA |
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| Entity.Property.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. |
MRCONSO.RRF | STR | String | NA | Entity.presentation.propertyId | Generated value for property textual presentation using "T" concatenated with a steadily incremented numerical value. | ||||
MRCONSO.RRF | STR | String | NA | Entity.comment.propertyId | Generated value for property comment using "C" concatenated with a steadily incremented numerical value. | ||||
MRCONSO.RRF | STR | String | NA | Entity.definition.propertyId | Generated value for property definition using "D" concatenated with a steadily incremented numerical value. | ||||
MRCONSO.RRF | STR | String | NA | Entity.instruction.propertyId | Generated value for property instruction using "I" concatenated with a steadily incremented numerical value. | ||||
MRCONSO.RRF | CUI | Unique identifier for Entity | NA | Entity.Property.text.content. |
| No comments | |||
MRCONSO.RRF | CUI | Unique identifier for Entity | NA |
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| Entity.Property.propertyId | Generated value for property using "CUI" concatenated with a steadily incremented numerical value. |
MRCONSO.RRF |
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| CUI | Unique identifier for Entity | NA | Entity.Property.propertyName | hard coded as constant in java file as "UMLS_CUI" | ||
MRCONSO.RRF |
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| CUI | Unique identifier for Entity | NA | Entity.Property.propertyType | hard coded as constant in java file as "property" | ||
MRCONSO.RRF |
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| CUI | Unique identifier for Entity | NA | Entity.Property.format | left as null | ||
MRSTY.RRF | STY | Semantic type | NA | Entity.Property.text.content |
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MRSTY.RRF | STY | Semantic type | NA | Entity.Property.propertyId | Generated value for property using "SemType" concatenated with a steadily incremented numerical value. | ||||
MRSTY.RRF | STY | Semantic type | NA | Entity.Property.propertyName | hard coded as constant in java file as "Semantic_Type" | ||||
MRSTY.RRF | STY | Semantic type | NA | Entity.Property.propertyType | hard coded as constant in java file as "property" | ||||
MRSTY.RRF | STY | Semantic type | NA | Entity.Property.value.dataType | Hard coded as constant in java file as "text/plain" | ||||
MRCONSO.RRF | LAT | Language of Term(s) | NA | Entity.Property.language | Logic of code simply selects the first definition in the source as the preferred source | ||||
MRCONSO.RRF | TS | Term status | NA | Entity.presentation.isPreferred | One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK. | ||||
MRCONSO.RRF | STT | String type | NA | Entity.presentation.isPreferred | One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK. | ||||
MRCONSO.RRF | ISPREF | Indicates whether AUI is preferred | NA | Entity.presentation.isPreferred | One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK. | ||||
MRRANK.RRF | RANK | Termgroup ranking | NA | Entity.presentation.isPreferred | One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK. | ||||
MRRANK.RRF | RANK | Termgroup ranking | NA | Entity.presentation.isPreferred | The first presentation for each language is automatically marked as isPreferred="true" after using comparator to sort list of presentations using comparator to evaluate each presentation based on a combination of values from LAT, TS, STT, ISPREF, RANK. | ||||
MRDEF.RRF | DEF | Definition | NA | Entity.definition.text.content |
| No comments | |||
MRDEF.RRF | DEF | Definition | NA |
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| Entity.definition.isPreferred | Logic of code simply selects the first definition in the source as the preferred source |
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MRSAT.RRF | ATN | Attribute name | NA | Entity.Property.propertyType | Translated to a LexGrid property type. For values AN, CX, HN this property is typed as a "COMMENT" in LexGrid. For value EV this property is typed "PRESENTATION" This only occurs when the STYPE points to the CODE, SCUI or SDUI columns in MRREL.RRF or MRCONSO.RRF. If the STYPE points to SAUI then the values are loaded as property qualifiers. | ||||
MRSAT.RRF | ATV | Attribute value | NA | Entity.Property.value | No comments | ||||
MRSAT.RRF | ATN | Attribute name | NA | Entity.Property.propertyQualifier.propertyQualifierName | If the STYPE points to SAUI then the value is loaded as a property qualifier attribute | ||||
MRSAT.RRF | ATV | Attribute value | NA | Entity.Property.propertyQualifier.value | If the STYPE points to SAUI then the value is loaded as a property qualifier attribute | ||||
MRSAT.RRF | ATUI | Unique identifier for attribute | NA | Entity.Property.propertyId | No comments | ||||
MRSAT.RRF | METAUI | Metathesaurus asserted unique identifier | NA | Entity.Property.PropertyQualifier.propertyQualifierName | set to "METAUI" | ||||
MRSAT.RRF | METAUI | Metathesaurus asserted unique identifier | NA | Entity.Property.PropertyQualifier.value | METAUI column value | ||||
MRSAT.RRF | STYPE | The name of the column in MRCONSO.RRF or MRREL.RRF that contains the identifier to which the attribute is attached | NA | Entity.Property.PropertyQualifier.propertyQualifierName | set to "STYPE" | ||||
MRSAT.RRF | STYPE | The name of the column in MRCONSO.RRF or MRREL.RRF that contains the identifier to which the attribute is attached | NA | Entity.Property.PropertyQualifier.value | STYPE column value | ||||
MRSAT.RRF | SUPPRESS | Suppressible flag | NA | Entity.Property.PropertyQualifier.propertyQualifierName | set to "SUPPRESS" | ||||
MRSAT.RRF | SUPPRESS | Suppressible flag | NA | Entity.Property.PropertyQualifier.value | STYPE column value if not null | ||||
MRCONSO.RRF | SAB | Suppressible flag | x | Entity.Property.source.content |
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MRCONSO.RRF | SAB | Suppressible flag | x | Entity.Property.propertyQualifier.propertyQualifierName | hard coded as constant in java file as "source-code" | ||||
MRCONSO.RRF | CODE | Suppressible flag | x | Entity.Property.propertyQualifier.value |
| No comments | |||
MRCONSO.RR | CODE | Suppressible flag |
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| x | Entity.Property.propertyQualifier.propertyQualifierName | hard coded as constant in java file as "AUI" | |
MRCONSO.RRF | AUI | Suppressible flag | x | Entity.Property.propertyQualifier.value | No comments | ||||
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| Suppressible flag | NA | Entity.presentation.representationalForm | When ATN value is EV this presentation will be given a representationalForm of "Abbrev." | ||||
MRCONSO.RRF | TTY | Term type in source | NA | Entity.presentation.representationForm | When TTY value is FN then representationalForm is represented as "Full Form" Otherwise the representationalForm is the same as the TTY source (i.e. if TTY is PT then representationalForm is PT.) PT is one of the preferred presentations. | ||||
MRCONSO.RR |
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| TTY | Term type in source | NA | Entity.Property.propertyQualifier.propertyQualifierId | hard coded as "HCD" | ||
MRHIER.RRF | HCD | Source asserted hierarchical number or code for this atom in this context | NA | Entity.Property.propertyQualifier.content | This propertyQualifier is present when the HCD is populated in the the MRHIER file. The corresponding code and property for entity or code is qualified as a code or entity with a context derived heirarchy. |
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