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The most common cause of this problem is an out of memory error caused by limited heap space in the Java Virtual Machine on the JBoss server instance running caIntegrator. If a study deployment fails due to this error, caIntegrator does not notify the user explicitly and instead logs the error in the server.log file located at the following path:
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_\[MATKC:installation root\]\caintegrator2\jboss-4.0.5.GA\server\default\log_ |
Note that the study's status will continue to show as 'Processing' on the 'Manage Studies' page even after the deployment has failed and the error has been logged.
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caIntegrator is not able to deploy studies using Affymetrix CEL files. caIntegrator is able to deploy studies using Affymetrix CHP files loaded as parsed data in caArray or Affymetrix TXT files loaded as imported (not parsed) data in caArray. |
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caIntegrator is not able to deploy studies using Affymetrix CEL files. caIntegrator is able to deploy studies using Affymetrix CHP files loaded as parsed data in caArray or Affymetrix TXT files loaded as imported (not parsed) data in caArray. |
In Windows, the heap size is set in the 'run.bat' file located at the following path:
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_\[MATKC:installation root\]\caintegrator2\jboss-4.0.5.GA\bin_ |
In Linux, the heap size is set in the 'run.conf' file located at the following path:
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_\[MATKC:installation root\]/caintegrator2/jboss-4.0.5.GA/bin_ |
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