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This procedural guide is meant for use in performing a new Protégé server build for both the NCI Thesaurus and BiomedGT instances. Protégé server builds can be performed either manually, or via automated run scripts. Generally, using the automated scripts would be less time-consuming. However, it is recommended that going through the manual process (at least once) be performed to understand the concepts and the workflow of a Protege build. Doing so will facilitate troubleshooting any future problems during a build.
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