NIH | National Cancer Institute | NCI Wiki  

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Sidebar Option

Function

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d92ea9060259d7bf-b6625ac3-40db4b98-8fd4b4d3-5ebaf9dbec2fc8f5e27101e0"><ac:plain-text-body><![CDATA[

[Study Name]

When you log in, one study displays in the left sidebar by default. Any study that you select in the My Studies drop-down list in the upper right of the page replaces this default selection.

]]></ac:plain-text-body></ac:structured-macro>

Home

Click this to return to the home page for the selected study.

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8bca8e4abda07b6c-91b82a93-43d0401b-9ed294df-064032269d8c7114035587c5"><ac:plain-text-body><![CDATA[

Search [Study Name]

Click this option to open the Search [Study Name] page from which you can launch queries into your selected study. For more information, see [4 - Searching a caIntegrator Study].

]]></ac:plain-text-body></ac:structured-macro>

Study Data

Click Saved Queries > My Queries to open the list of previous queries you saved. Click any item in the list to open the saved query, which displays on the Criteria, Columns and Sorting tabs. From those tabs, you can modify criteria and/or launch the query again. For more information, see Saving a Query.
Click Saved Lists > Global Lists or > My Lists to open gene lists that have been saved for a study. From any page in caIntegrator that shows such a group, you can save a such a list of genes to be used for searches or analyses. See Creating a Gene or Subject List.
Click Saved Copy Number Analysis to open an Edit GISTIC Analysis page. You can review genes retrieved from the analysis or, with appropriate permissions, you can edit the metadata for the analysis. See Editing a GISTICAnalysis.

Analysis Tools

Click any of the listed options to open a page where you can launch an analysis of the data in the selected study.

Study Management

Click either of the listed options to manage the selected study through editing or deleting it or by creating a new study.

Application Management

Click Manage Platforms to identify, add or remove platforms that caIntegrator supports. For more information, see Managing Platforms.

caIntegrator Menu

  • Click Support to view contact information for Application Support.
  • Click User Guide to open the caIntegrator User's Guide.

Help

Click the Help icon at the top of each page to open a context-sensitive topic. The help page displays information (from this user's guide) that corresponds to the page from which help was opened.

...

To log out of caIntegrator, click the logout link in the upper right-hand corner of the page.

Using caIntegrator Online Help

The caIntegrator online help is in user's guide format. It explains how to use all of the features of the caIntegrator portal.

Info
titleNote

You can open the user's guide without being logged into caIntegrator.

To access the user's guide in caIntegrator, click the Help icon/menu options available in the upper right corner of the user interface (help buttonImage Added) and on the left sidebar under the About caArray section. Context sensitive topics relevant to the page open for your assistance.

Help and additional resource links remain fixed through all the user interface pages.

Application Support

For any general information about the application, application support or to report a bug, contact NCICB Application Support.

...