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Publications Citing caDSR and CDEs

  1. Hu, H., Correll, M., Kvecher, L., Osmond, M., Clark, J., Bekhash, A., Schwab, G., Gao, D., Gao, J., Kubatin, V., Shriver, C.D., Hooke, J.A., Maxwell, L.G., Kovatich, A.J., Sheldon, J.G., Liebman, M.N., Mural, R.J.
    "DW4TR: A Data Warehouse for Translational Research". Journal of Biomedical Informatics volume 44, issue 6, year 2011, pp. 1004 - 1019
  2. Hsu, Chien-Yeh, and Chi-Hung Huang. "Annotating Taiwan Cancer Registry with CaDSR for International Interoperability." Future Wireless Networks and Information Systems. By Shin-Bo Chen. Springer Verlag, 2012. 257-62. Print.
  3. Martínez Costa, C., Menárguez-Tortosa, M., Fernández-Breis, J.T., "Clinical data interoperability based on archetype transformation". Journal of Biomedical Informatics volume 44, issue 5, year 2011, pp. 869 - 880
  4. James P. McCusker, Joanne Luciano, and Deborah L. McGuinness, "Towards an Ontology for Conceptual Modeling". Tetherless World Constellation Department of Computer Science Rensselaer Polytechnic Institute, http://tw.rpi.edu/media/2011/03/14/da62/cmo.pdf
  5. Alejandra González-Beltrán, Ben Tagger, Anthony Finkelstein, "Federated Ontology-based Queries over Cancer Data". Accepted for publication BMC Bioinformatics
  6. Weintraub WS, Karlsberg RP, Tcheng JE, Buxton AE, Boris JR, Dove JT, Fonarow GC, Goldberg LR, Heidenreich P, Hendel RC, Jacobs AK, Lewis W, Mirro MJ, Shahian DM. ACCF/AHA 2011 key data elements and definitions of a base cardiovascular vocabulary for electronic health records: a report of the American College of Cardiology Foundation/American Heart Association Task Force on Clinical Data Standards. Circulation. 2011;124:103--123.
  7. Pathak J, Wang J, Kashyap S, Basford M, Li R, Masys DR, Chute CG "Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience", JAMIA doi:10.1136/amiajnl-2010-000061, May 2011
  8. Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute "Quality Evaluation of Cancer Study Common Data Elements Using the UMLS Semantic Network". MIA Summit on Clinical Research Informatics (AMIA CRI 2011)|http://proceedings.amia.org/]. San Francisco, CA, USA, March 11-12, 2011
  9. Cui Tao*, PhD, Guoqian Jiang*, PhD, Weiqi Wei, MM, Harold R. Solbrig,and Christopher G. Chute MD, DrPH "Towards Semantic-Web Based Representation and Harmonization of Standard
    Meta-data Models for Clinical Studies". AMIA Summit on Clinical Research Informatics (AMIA CRI 2011)|http://proceedings.amia.org]. San Francisco, CA, USA. March 11-12, 2011
  10. Informatics in radiology: an information model of the DICOM standard. Charles E CE Kahn, Curtis P CP Langlotz, David S DS Channin and Daniel L DL Rubin crossref 31(1):295-304 1 Jan 2011 PMID 20980665, doi: 10.1148/rg.311105085
  11. Krikov S, Price RC, Matney SA, Allen-Brady K, Facelli JC Enabling GeneHunter as a Grid Service. "A Case Study for Implementing Analytical Services in Biomedical Grids".. Methods Inf Med. 2010 Oct 20;49(6).
  12. Park YR, Kim JH. Achieving interoperability for metadata registries using comparative object modeling. Stud Health Technol Inform. 2010;160(Pt 2):1136-9.
  13. Wiki Markup
    Amin W, Singh H, Dzubinski LA, Schoen RE, Parwani AV. Design and utilization of the colorectal and pancreatic neoplasm virtual biorepository: "An early detection research network initiative." +J Pathol Inform+ \[serial online\] 20101:22. Available from: [http://www.jpathinformatics.org/text.asp?2010/1/1/22/70831]
  14. McCusker, James P., Joshua A. Phillips, Alejandra González Beltrán, Anthony Finkelstein, Michael Krauthammer, "Semantic web data warehousing for caGrid", BMC Bioinformatics, Vol 10, Supp 10, 2009.
  15. Frey LJ, Turner, S., et al. (2010 submitted - under review). "Obtaining Desiderata in the Common Terminology Criteria for Adverse Events: A Case Study", JAMIA
  16. Waqas Amin, Harpreet Singh, Andre K. Pople, Sharon Winters, Rajiv Dhir, Anil V. Parwani, and Michael J. Becich, "A decade of experience in the development and implementation of tissue banking informatics tools for intra and inter-institutional translational research.", J Pathol Inform. 2010; 1: 12. Published online 2010 August 10. doi: 10.4103/2153-3539.68314.
  17. Wiki Markup
    Joshua Phillips, Alejandra González Beltrán, Anthony Finkelstein, Jyotishman Pathak "Exposing caGrid Data Services as Linked Data" In the proceedings of the \[ 2010 AMIA Summit on Clinical Research Informatics (AMIA CRI 2010)\|http://crisummit2010.amia.org/\]. San Francisco, CA, USA. March 12-13, 2010.
  18. Wiki Markup
    Alejandra González Beltrán, Anthony Finkelstein, J Max Wilkinson, Jeff Kramer "Domain Concept-Based Queries for Cancer Research Data Sources " In the proceedings of the \[ 22nd IEEE International Symposium on Computer-Based Medical Systems 2009 (CBMS 2009)\|http://cvial.ece.ttu.edu/cbms2009/\]. Special track on HealthGrid Computing - Applications to Biomedical Research and Healthcare
  19. Sabados, William Thomas, Thesis: Comparing semantic matching results of schema matchers and metadata registry enabled systems. Pub date:2010. Pages:xii, 164 leaves
  20. McCarthy J.L., Warzel D, Kendall E., Bargmeyer B., Solbrig H, Keck K, and Gey F., "Data Modeling and Harmonization with OWL: Opportunities and Lessons Learned", 5th International Workshop on Semantic Web Enabled Software Engineering, 8th International Semantic Web Conference Proceedings and Session, 2009, Virginia, USA
  21. Sambit K Mohanty, Amita T Mistry, Waqas Amin, Anil V Parwani, Andrew K Pople, Linda Schmandt, Sharon B Winters, Erin Milliken, Paula Kim, Nancy B Whelan, Ghada Farhat, Jonathan Melamed, Emanuela Taioli, Rajiv Dhir, Harvey I Pass, and Michael J Becich., "The development and deployment of Common Data Elements for tissue banks for translational research in cancer – An emerging standard based approach for the Mesothelioma Virtual Tissue Bank", BMC Cancer. 2008; 8: 91. Published online 2008 April 8. doi: 10.1186/1471-2407-8-91.
  22. Thora Jonsdottir, Johann Thorsson, Ebba Thora Hvannberg, Jan-Eric Litton, Helgi Sigurdsson, "The Nordic Common Data Element repository for describing cancer data - International Journal of Metadata, Semantics and Ontologies" . Inderscience 232 Int. J. Metadata, Semantics and Ontologies, Vol. 4, No. 4, 2009
  23. Davies, J., Gibbons, J., Harris, S,, Warzel, D. "Evolving Health Informatics Semantic Frameworks and Metadata-Driven Architectures", Position Paper in Proceedings and session presented at Microsoft eScience Conference, (December 2008), Indiana, USA
  24. Frey LJ, Maojo V and Mitchell JA. (2008). "Genome Sequencing: a Complex Path to Personalized Medicine". In Kim S, Tang H, Mardis ER (Eds.), Advances in Genome Sequencing Technology and Algorithms (pp. 53-75). Norwood, MA: Artech House Publishers, Inc.
  25. Waqas Amin, Anil V Parwani, Linda Schmandt, Sambit K Mohanty, Ghada Farhat, Andrew K Pople, Sharon B Winters, Nancy B Whelan, Althea M Schneider, John T Milnes, Federico A Valdivieso, Michael Feldman, Harvey I P, Rajiv Dhir, Jonathan Melamed and Michael J Becich., "National Mesothelioma Virtual Bank: A standard based biospecimen and clinical data resource to enhance translational research.", BMC Cancer 2008, 8:236doi:10.1186/1471-2407-8-236
  26. Cryer, M and Frey LJ (2009) "Agent Based Modeling Supporting the Migration of Registry Systems to Grid Based Architectures." Proceedings of AMIA Summit on Translational Bioinformatics, San Francisco, CA.
  27. Komatsoulis, G.A., Warzel, D.B., Hartel, F.W., Shanbhag, K, Chilukuri, R, Fragoso, G., de Coronado, S, Reeves, D.M., Hadfield, J.B., Ludet, C., and P.A. Covitz (2007) "caCORE version 3: Implementation of an model driven, service-oriented architecture forsemantic interoperability+." +Journal of Biomed Informatics. 2008 February; 41(1): 106--123. Published online 2007 April 2. doi: 10.1016/j.jbi.2007.03.009.
  28. Ashokkumar A. Patel, John R. Gilbertson, Louise C. Showe, Jack W. London, Eric Ross, Michael Ochs, Joseph Carver, Andrea Lazarus, Anil V. Parwani, Rajiv Dhir, J. Robert Beck, Michael Liebman, Fernando U. Garcia, Jeff Prichard, Myra Wilkerson, Ronald B. Herberman, Michael J. Becich, and the PCABC, "A Novel Cross-Disciplinary Multi-Institute Approach to Translational Cancer Research: Lessons Learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC)", Cancer Inform. 2007; 3: 255--274. Published online 2007 June 8.
  29. Frey LJ, Maojo V and Mitchell JA. (2007). "Bioinformatics Linkage of Heterogeneous Clinical and Genomic Information in Support of Personalized Medicine." IMIA Yearbook of Medical Informatics, 21, 98 - 105.
  30. Crowley R, Wright L, Warzel D, Sioutos N, Mohanty S, Komatsoulis G, Chilukuri R, Tobias J, "The CAP cancer protocols - a case study of caCORE based data standards implementation to integrate with the Cancer Biomedical Informatics Grid", BMC Medical Informatics and Decision Making (June 20 2006) 6:25
  31. Covitz P, Warzel D, Fragoso G, Chilukuri R, Phillips J, "The caCORE Software Development Kit: Streamlining construction of interoperable biomedical information services.", BMC Medical Informatics and Decision Making (2006) 6:2
  32. Ashokkumar A Patel, John R Gilbertson, Anil V Parwani, Rajiv Dhir, Milton W Datta, Rajnish Gupta, Jules J Berman, Jonathan Melamed, Andre Kajdacsy-Balla, Jan Orenstein, Michael J Becich and the Cooperative Prostate Cancer Tissue Resource (CPCTR), "An informatics model for tissue banks – Lessons learned from the Cooperative Prostate Cancer Tissue Resource", BMC Cancer 2006, 6:120doi:10.1186/1471-2407-6-120
  33. Ashokkumar A Patel, André Kajdacsy-Balla, Jules J Berman, Maarten Bosland, Milton W Datta, Rajiv Dhir, John Gilbertson, Jonathan Melamed, Jan Orenstein, Kuei-Fang Tai and Michael J Becich, "The development of common data elements for a multi-institute prostate cancer tissue bank: the Cooperative Prostate Cancer Tissue Resource (CPCTR) experience.", BMC Cancer 2005, 5:108 doi:10.1186/1471-2407-5-108
  34. Warzel D, Edelstein C, Lin C, Winget M, Thornquist M, "Proteomics Knowledge databases: facilitating collaboration and interaction between academia, industry, and federal agencies" in Informatics in Proteomics, Srivastava S, Zhang Z, Ravichandran V, Hanash S, Gangal R, Medjahed D, Lockett S, Crichton D, Fenyo D, Kowalski J, Eng J, Beer D, Hitt B, Taylor & Francis/CRC Press. 2005
  35. Gao Q, Zhang YL, Xie ZY, Zhang QP, Hu ZZ.. "caCORE: core architecture of bioinformation on cancer research in America" Beijing Da Xue Xue Bao 2006 Apr 18;38(2):218-21. Chinese.
  36. Winget MD, Baron JA, Spitz MR, Bremmer DE, Warzel D, Kincaid H, Thornquist M, Feng Z, "Development of common data elements: The experience of and recommendations from the early detection research network", International Journal of Medical Informatics, 2003, 70:41-48
  37. Silva, J., Chute, C., Cancer informatics: essential technologies for clinical trials, 2002. Springer Verlag, New York

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