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About this page
This
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page explains the
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operational procedure for maintaining optimal Protégé performance and managing the publication of data.
There are two aspects to
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- Update of Protege software
- Publication of data edited in Protege
Update of Protege software
Protégé operations:
Updating the Protégé application
The Protégé application is undergoing active, continual development. EVS has extended Protégé using the following plug-ins:
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- NCI Edit tab
- NCI Workflow tab
- NCI Code Generator
- NCI Changes tab
- Chat tab
- Prompt tab
As
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we continue to develop these plug-ins, they need to be tested and eventually moved into the production editing environment.
Publication
Publication will take multiple facets.
Publishing Protégé data
This section discusses three aspects of publishing Protégé data:
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The information about publishing to BiomedGT is provided for historical purposes. |
Publishing to the BiomedGT Wiki
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This section discusses two typical scenarios for publishing to the BiomedGT Wiki from
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Single concept publishing
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Protégé:
Publishing a single concept
In this scenario, an editor edits a concept, saves the edited concept, and clicks a Publish button to push the changed
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data to the Wiki.
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Publishing structural changes
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Occasionally new roles will be added to the vocabulary or, rarely, removed. Properties could be added or have their list values modified. These changes are not things done by editors but are instead done by administrators of the vocabulary. These changes will also need to make their way to the Wiki when they occur.
Publication of NCI Thesaurus to DTS
The caCORE 3.2 will still be supported for many months after we have moved to working on the NCI Thesaurus in Protege. This will require us to export data from Protege to an OWL file, then converting this to a vaild Ontylog formatted file for loading into DTS.
to vocabulary
Administrators sometimes make the following administrative changes to the vocabulary:
- Add new roles
- Remove roles (rarely occurs)
- Add properties
- Modify list values
After the administrator makes structural changes, those changes are migrated to the wiki through a manual load process.
Publishing
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of NCI Thesaurus and BiomedGT to LexBIG
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(evsapi 4.0)
We will use the LexBIG application to support the evsapi 4.0
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and
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future versions. LexBIG can directly import OWL-formatted data. We will also need to implement several QA processes to support publishing to LexBIG.
Learn more about the procedure for publishing BiomedGT data to LexBIG and the DTS.
