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Step:5.1
Copy the caintegrator-analysis-server.tar file created to the directory /local/content/caintegrator.

Step:5.2
Type the command: (color:red}tar -xvf caintegrator-analysis-server.tar

Step: 6
Go to the newly created directory /local/content/caintegrator/bin. Type the commands:
chmod u+x *.sh
dos2unix *.sh

Step :7
Start Rserve by typing:

./startRserve.sh
Rserve should now be running. The last line printed on the console should be:

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Step:8
Go to the directory /home/caintegrator (you can do this by just typing cd).
Start the analysis server by executing the command:

./S92Rserver start

Additional post-deployment test case instructions:

1) Open the file/local/content/caintegrator/log/analysisServer.log and you should see something similar to:

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Steps to add a Data File:

Step:1
Click on this link https://gforge.nci.nih.gov/frs/?group_id=406^{Image Removed} and you will find data files for particular application
For example:
Rembrandt:
Rembrandt_mas5.dataMatrix_275_10-15-07.Rda
Rembrandt_UnifiedGene.dataMatrix_275_10-15-07.Rda
Ispy :
newDataFile.zip

Step 2:
Copy the data file to the directory local/content/caintegrator/Rdatafiles/

Step 3: Restart the analysis server
Log in to the analysis machine
Stop the analysis server by executing the command:
./S92Rserver stop
Start the analysis server by executing the command:
./S92Rserver start

Using the Analysis Server for Development Purposes:

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1) Copy StartStopNodes_develop to /home/caIntegrator and started and stopped similar to S92Rserver

./StartStopNodes_develop stop

And

./StartStopNodes_develop start

2) Copy runDeveloperNodes.sh to /local/content/caintegrator/bin/

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You can substitute actual developer name to identify each node.