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|| Sign off || Date || Role \\ || CBIIT or Stakeholder Organization \\ ||
|--- | ---\\ |--- | ---\\ |

The *purpose of this document* is to collect, analyze, and define high-level needs and features of the National Cancer Institute Center for Biomedical Informatics and Information Technology (NCI CBIIT) Protégé Release 1.4.3. This document focuses on the functionalities proposed by the product stakeholders and target users in order to make it a better product. The use-case and supplementary specifications document will detail how the framework will fulfill these needs.

h2.

 Vision and Needs

The *objective of this release* of Protégé 1.4.3 is to provide bugs fixes found in 1.4.2 Protégé release but was not considered a showstopper for the 1.4.2 release.

h2. Current Solution

Protégé 1.4.2 is currently in production.

h2. Bug Fixes

|| GForge number

 \\
(hyperlinked)

 || Brief description of

 item \\ || (Approved or

 Proposed) \\ ||
| [29752|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29752] | Generate Reports shows undesirable internal values | Approved |
| [29753|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29753] | Extra box character shows in generated report | Approved |
| [29758|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29758] | Duplicate restrictions are found in the class BRCA1_wt_Allele.

 | Approved |
| [29770|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29770] | Concept History Plugin - OLD_PARENT is deleted during save of concept history | Approved |
| [29923|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29923] | Unalble to search from box by hitting return key | Approved |
| [29517|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29517] | When invalid format is provided on a clone it doesn't retain previously entered Definition | Approved |
| [30038|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30038] | Change of Semantic_Type value after changing PTs | Approved |
| [30082|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30082] | Explanation Server Does Not Properly Startup for NPO Vocabulary | Approved |
| [30111|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30111] \\ | Modeler can't create workflow tasks | Approved |

h2. General Support Activities

This section describes in detail all the related activities which must be performed for this release but do not add functionality. These activities are included in the scope and project plan due to level of effort or relative importance to the overall success of delivery of the release.

|| GForge number (hyperlinked) || Brief description of general support activity || Iteration \\
(Approved or Proposed) ||
|--- | Example, "Level 2 Support, integration of help and training to the user community." |--- |

h2. Stakeholder Summary

|| Customer Name \\ || Role \\ || Interest/Need \\ ||
| NCI CBIIT EVS Content Editorial Team \\ | EVS Content Management \\ | Primary Users of Protégé. Utilize Protégé to edit EVS content \\ |
|--- |--- |--- |
\\
\\
|| CBIIT Staff/Contractor Name \\ || Role \\ || Responsibilities \\ ||
| George Komatsoulis | NCI CBIIT \\ | Oversees NCI CBIIT Application Infrastructure \\ |
| Avinash Shanbhag \\ | Director of CORE Engineering \\ | Oversees NCICB caCORE Software Engineering \\ |
| Sherri de Coronado \\ | Contract Project Officer \\ | Management/technical resource from Bioinformatics vertical. Contract management, coordination, testing, documentation \\ |
| Gilberto Fragoso \\ | Government Lead \\ | Technical resource from Bioinformatics vertical \\ |

h2. Technical Environment

This product uses the following technical components which have been derived from the current [NCICB Technology Stack|https://gforge.nci.nih.gov/docman/index.php?group_id=27&selected_doc_group_id=460&language_id=1].

|| Component || Description ||
| Client Application \\ | The Protégé client is java based and provides a complete editing environment for Protégé databases, call ontologies. It uses the same plugin architecture to support extensions, called Tabs. For example, the NCI Edit Tab, Workflow, Changes, and Prompt, are examples of plugin tabs. \\
\\
Java 1.5.x \\ |
| Application Server | None |
| Database Server | MySQL |
| Operating System | Any that supports Java: Windows XP, Linux, OS X \\ |
| \[caCORE:Other\] | Portable ANSI-SQL compliant relational schemas \\ |

h2. Product Dependencies

This release is dependent on the caCORE components or products documented in the [CORE Product Dependency Matrix|https://wiki.nci.nih.gov/x/hIx8].

\[EVS:Provide additional explanation as applicable. For example, "The EVS vocabulary systems are used by the Java client to retrieve and validate concept information for naming and defining meanings."\]

h2. Out of Scope Items

Items that are out of scope were evaluated as part of the initial scoping activities for this release, and subsequently not included in the final approved scope. These items are also documented in the cumulative backlog of requirements found on the product GForge site. They include out-of-scope functional requirements (enhancements or new features), bug fixes, non-functional requirements, and general support activities.

|| GForge number (hyperlinked)

 || Brief description of item moved from the in-scope section

 \\
with brief explanation added of why it was not included in this

 release \\ || Iteration during which the item \\
was removed from in-scope \\ ||
| [30038|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30038] | Change of Semantic_Type value after changing PTs |--- |
| \\
[30305|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30305] | When cloning, not escaping definition if invalid class name |--- |
| \\
[30338|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30338] | If only 2 N&S restriction and one is removed through merge of filler values - shows as defined |--- |
| [30352|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30352] | Changing Concept Name in namespace and refreshing causes blank preferred name |--- |
| [30375|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30375] | After resolving referencing class in PreRetire, does not refresh referencing classes list |--- |
| [30376|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30376] | If rename class_name two classes, can never PreMerge them |--- |
| [30378|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30378] | Null pointer if rename namespace while class is loaded in Merge tab |--- |

h2. Document History

|| Item || Information ||
| *Document Version:* \\ | Click the Info tab. View the Recent Changes or click the link to view the page history. \\ |
| *Last Modified:* \\ | Refer to the first line displayed in the document window. \\ |
| *Project GForge site:* \\ | \[EVS:Project GForge site link\] \\ |
| *Most current version:* \\ | Unless the display includes a notice that you are viewing a previous version, you are viewing the most current version of this Scope Document for the release indicated in the title. \\ |
| *Revision history:* \\ | Click the Info tab. In the Recent Changes area, click the link to view the page history. \\ |
| *Review history:* \\ | Click the Info tab. In the Recent Changes area, note the developer who made each change and the date and time. Refer to the [Key People Directory|https://wiki.nci.nih.gov/x/Cg5y] for their roles. Click the link to view any page or to view the page history, and then click the link for a page. When the page opens, view the comments and changes made in that version. \\ |
| *Related documents:* \\ | \[EVS:Name and URL of each related document\] \\ |

h2. Project Information

|| CBIIT Management \\ || Role || Responsibilities ||
| Sherri de Coronado | Contract Project Officer | Management/technical resource from Bioinformatics vertical. Contract management, coordination, testing, documentation \\ |
| Gilberto Fragoso | Government Lead | Technical resource from Bioinformatics vertical |

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