NIH | National Cancer Institute | NCI Wiki  

Versions Compared

Old Version 27

changes.mady.by.user Unknown User (wileyal)

Saved on

compared with

New Version 28

changes.mady.by.user Unknown User (wileyal)

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Comment: Migration of unmigrated content due to installation of a new plugin

...

Page info
title
title

Section
Column

Anchor
ContentsofthisPage
ContentsofthisPage
Panel
titleContents of this Page
Table of Contents
minLevel2

Column
Include Page
MATKC:MAT Quick Links
MATKC:MAT Quick Links
Panel
titleAt a Glance Details
  • Version Number and Release Date:
:title} {section} {column} {anchor:ContentsofthisPage}{panel:title=Contents of this Page} {toc:minLevel=2} {panel} {column} {column} {include:MATKC:MAT Quick Links} {panel:title=At a Glance Details} * Version Number and Release Date:
  • 1.3.1
  • December
  • 2011
*
  • Primary
  • audience:
  • Researchers
  • and
  • bioinformaticians
*
  • caBIG®
  • Tool
  • Bundle:
  • Life
  • Sciences
  • Distribution
*
  • Grid
  • Enabled?
  • Yes
*
  • Compatibility
  • Level:
  • Under
  • review
*
  • Installation
  • Level:
  • Intermediate
  • -
  • technical
  • assistance
  • may
  • be
  • required,
  • download
  • may
  • require
  • supporting
  • infrastructure
  • or
  • software
*
  • System
  • Requirements:
  • Refer
  • to
  • the
[
]
  • section.
{panel} {column} {section} h2. Tool Overview {multiexcerpt:name=caIntegrator} !Caintegrator.jpg|alt="caIntegrator logo",width=300px! caIntegrator is a web-based software application that allows researchers to set up custom, caBIG®-compatible web portals to conduct integrative research, without requiring programming experience. These portals bring together heterogeneous clinical, microarray and medical imaging data to enrich multidisciplinary research.{multiexcerpt} h2. Installation and Downloads h3. Downloads and Installation Instructions * caIntegrator Public Server*: A public [caIntegrator|https://caintegrator2.nci.nih.gov/caintegrator2/login.action] hosted by NCI is free to community. A free account will be issued upon registration. * [Download, Install or Upgrade caIntegrator|https://gforge.nci.nih.gov/frs/?group_id=507] * [caIntegrator v1.3.1 Release Download|https://gforge.nci.nih.gov/frs/?group_id=507] * [caIntegrator:caIntegrator Demo Data Download and Instructions for Use] * [caIntegrator 1.4 Local Installation Guide]; [caIntegrator 1.3 Local Installation Guide] h3. System Requirements caIntegrator is an open-source, web-based J2EE Java application employing Spring, Struts 2 and Hibernate technologies. Full installation requires installation of JBoss 4.0.5; MySQL 5.0.45; ANT (Apache); JDK 1.5. h2. Forum and Support for caIntegrator * [caIntegrator Project Management|https://wiki.nci.nih.gov/x/cQQHAQ] * [caIntegrator GForge Project|http://gforge.nci.nih.gov/projects/caintegrator2/] * [End User Forum|https://cabig-kc.nci.nih.gov/Molecular/forums/viewforum.php?f=23&sid=e3a9147a19936d2b715e12a4c04a117f] * [Developer Forum|https://cabig-kc.nci.nih.gov/Molecular/forums/viewforum.php?f=24&sid=9d821031a7ce174db55e28da13c59074] * [caIntegrator users Listserv|https://list.nih.gov/cgi-bin/wa.exe?A0=CAINTEGRATOR_USERS] * [Report a Defect or Request a Feature at caIntegrator GForge Community Tracker|https://gforge.nci.nih.gov/tracker/?atid=2416&group_id=507] * [Application Support|mailto:ncicb@pop.nci.nih.gov] h2. Documentation * Refer to [caIntegrator Documentation]. * [Online Help|https://caintegrator2.nci.nih.gov/caintegrator2/help/wwhelp/wwhimpl/js/html/wwhelp.htm?context=caIntegrator2&topic=add_annotation_group_help] is available in the application. * No training materials are available. Refer to [#Presentations, Demos and Other Materials] for an overview and demo. h2. What's New For news and events, visit [caIntegrator:What's new for caIntegrator]. Twenty-three (23) citations were added to [caIntegrator:caIntegrator Citations]. h2. Presentations, Demos and Other Materials * [caIntegrator:caIntegrator Demos] * [caIntegrator overview at the AACR 2011 Annual Meeting|caIntegrator:caIntegrator^CaIntegrator_Overview_AACR_2011_v2.ppt] * [caIntegrator Brochure|https://ncisvn.nci.nih.gov/svn/caintegrator2/trunk/docs/project_management/external_meetings/caIntegrator_toolsheet_2010.pdf] * [Overview and Demo of caIntegrator Slides and Screencast (make sure your speakers are on to play audio)|https://gforge.nci.nih.gov/svnroot/caintegrator2/trunk/docs/project_management/external_meetings/overview_screencast/overview_screencast.html] * [Use Study Screencast (applicable up to caIntegrator2 1.0.1)|https://gforge.nci.nih.gov/svnroot/caintegrator2/trunk/docs/project_management/external_meetings/use_study_screencast/use_study.html] (make sure your speakers are on to play audio) * [Deploy study Screencast (applicable up to caIntegrator2 1.0.1)|https://gforge.nci.nih.gov/svnroot/caintegrator2/trunk/docs/project_management/external_meetings/deploy_study_screencast/deploy_study_screencast.html] (make sure your speakers are on to play audio) h2. caIntegrator Knowledge Base [caIntegrator FAQ and In-depth Articles|caIntegrator:caIntegrator FAQ and In-depth Articles] \- Find the answers to the most frequently asked questions; understand how caIntegrator works. If you still don't know if caIntegrator is for you, refer to the [caIntegrator:caIntegrator Case Studies] to see examples of how caIntegrator could be used in different scenarios. Each institution could have its own unique setting and requirements. Visit [caIntegrator:caIntegrator Success Stories] and share your success or even not so successful a story here. Your input will help others. Refer to the [caIntegrator:caIntegrator Citations] for a list of articles about caIntegrator. h2. Open-source development * Link to [caIntegrator Open Development Code Base|https://ncisvn.nci.nih.gov/WebSVN/listing.php?repname=caintegrator2] h2. Integration with other tools - caArray caIntegrator currently only works with caArray 2.3.x and 2.4.x. Therefore, please make sure that the version of the caArray instance from which caInt2 retrieves data from is 2.3.0 and

Tool Overview

Multiexcerpt
namecaIntegrator

caIntegrator logoImage Added caIntegrator is a web-based software application that allows researchers to set up custom, caBIG®-compatible web portals to conduct integrative research, without requiring programming experience. These portals bring together heterogeneous clinical, microarray and medical imaging data to enrich multidisciplinary research.

Installation and Downloads

Downloads and Installation Instructions

System Requirements

caIntegrator is an open-source, web-based J2EE Java application employing Spring, Struts 2 and Hibernate technologies. Full installation requires installation of JBoss 4.0.5; MySQL 5.0.45; ANT (Apache); JDK 1.5.

Forum and Support for caIntegrator

Documentation

What's New

For news and events, visit What's new for caIntegrator.

Twenty-three (23) citations were added to caIntegrator Citations.

Presentations, Demos and Other Materials

caIntegrator Knowledge Base

caIntegrator FAQ and In-depth Articles - Find the answers to the most frequently asked questions; understand how caIntegrator works.

If you still don't know if caIntegrator is for you, refer to the caIntegrator Case Studies to see examples of how caIntegrator could be used in different scenarios.

Each institution could have its own unique setting and requirements. Visit caIntegrator Success Stories and share your success or even not so successful a story here. Your input will help others.

Refer to the caIntegrator Citations for a list of articles about caIntegrator.

Open-source development

Integration with other tools - caArray

caIntegrator currently only works with caArray 2.3.x and 2.4.x. Therefore, please make sure that the version of the caArray instance from which caInt2 retrieves data from is 2.3.0 and above.