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Page History
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Tool
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Overview
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NCI
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Protégé
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is
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a
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collection
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of
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Protégé
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plug-ins
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developed
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for
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the
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NCI-specific
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editing
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environment.
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Protégé
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is
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an
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open-source
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development
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environment
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for
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ontologies
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and
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knowledge
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based
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systems.
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The
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OWL
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plug-in
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extends
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the
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environment
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to
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support
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the
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Web
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Ontology
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Language
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(OWL).
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Please
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go
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to
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for
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more
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information.
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The
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NCI
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Protégé
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collection
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of
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plug-ins
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is
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used
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to
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edit
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the
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NCI
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Thesaurus.
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NCI
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Protégé
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provides
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a
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customized
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OWL
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editing
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environment,
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including
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additional
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editing
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and
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querying
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capabilities
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that
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are
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not
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available
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in
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the
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Protégé
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OWL
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plug-in.
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The
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NCI-specific
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plug-ins
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have
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been
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implemented
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as
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a
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tabbed
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interface.
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Beginning
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with
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NCI
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Protégé
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1.3.0.
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this
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tool
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allows
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imports
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of
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ontologies
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in
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database
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mode
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and
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enables
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collaborators
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to
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begin
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"federating"
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ontologies.
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NCI
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Protégé
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runs
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in
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a
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client-server
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environment.
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Current
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editors
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will
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want
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to
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download
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the
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client
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only.
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Others
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may
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wish
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to
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download
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for
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review
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or
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download
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and
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install
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the
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entire
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client-server
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package.
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Links
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to
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both
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are
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provided
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in
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the
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...
.
What's
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New
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The
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final
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version
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of
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NCI
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Protégé
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(1.4.3)
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to
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be
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built
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on
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the
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Protégé
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3.4
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code
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base
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from
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Stanford
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has
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been
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released.
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The
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status
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of
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NCI
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Protégé
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is
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now
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maintenance
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mode.
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Only
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major
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bugs
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that
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appear
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in
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production
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will
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be
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fixed.
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Future
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versions
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of
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NCI
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Protégé
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are
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being
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considered
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for
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the
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Protege
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4
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code
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base.
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Features
The EVS Protégé distribution includes the NCIEditTab Protégé plug-in
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editing
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client
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(and
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other
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plug-ins),
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a
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highly
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concurrent
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Protégé
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server
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(modified
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from
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the
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base
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Stanford
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distribution),
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and
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an
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Explanation
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server
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that
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includes
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the
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Pellet
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reasoner.
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Client
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Environment
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The
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client
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environment
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includes:
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- NCIEditTab
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- plug-in,
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- supporting
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- basic
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- editing
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- functionality
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- as
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- well
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- as
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- complex
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- edits
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- (merge,
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- split,
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- retirement,
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- and
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- cloning),
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- batch
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- jobs,
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- report
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- writing,
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- and
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- tree-like
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- views
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- of
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- graphs
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- built
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- along
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- transitive
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- relationships
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- (e.g.
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- part_of).
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- It
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- supports
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- XMLLiterals
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- for
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- complex
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- properties
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- as
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- per
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- configuration,
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- and
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- tracks
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- editing
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- history
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- independently
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- of
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- the
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- change
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- ontology,
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- which
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- is
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- used
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- in
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- support
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- of
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- Prompt.
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- LuceneQuery
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- tab
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- plug-in,
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- supporting
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- a
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- variety
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- of
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- search
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- modes
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- (including
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- negation)
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- on
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- annotations
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- and
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- restrictions
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- as
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- well
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- as
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- indexed
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- Lucene
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- "match"
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- and
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- "sounds
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- like"
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- searching,
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- plus
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- reporting
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- support
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- for
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- the
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- result
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- sets.
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- Explanation
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- tab
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- plug-in,
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- providing
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- a
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- description
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- logic
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- entailment-explanation
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- facility
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- integrated
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- with
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- an
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- incremental
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- classifier;
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- classification
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- results
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- are
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- available
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- to
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- all
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- the
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- clients
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- in
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- the
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- client-server
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- environment.
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- Workflow
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- tab
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- plug-in,
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- supporting
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- basic
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- workflow/assignment
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- functionality,
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- and
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- communications
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- to
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- Semantic
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- Media
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- Wiki
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- if
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- set
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- up
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- for
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- collaborative
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- development.
Roadmap
| Wiki Markup |
|---|
h3.Roadmap {multi-excerpt-include:pageTitle=NCI Protege Release Roadmap|name=NCIProtegeReleasestoPresentSummarized|nopanel=true} h2. |
At
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A
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Glance
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Details
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- Version
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- Number
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- and
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- Release
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- Date:
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- 1.4.3,
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- February,
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- 2011
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- (NCI
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- Protégé
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- 1.4
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- requires
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- Protégé
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- 3)
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- caBIG®
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- Tool
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- Bundle:
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- No
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- related
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- bundle
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- Grid
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- Enabled?
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- Supporting
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- tool
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- Compatibility
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- Level:
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- Supporting
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- tool
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- Installation
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- Level:
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- Intermediate
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- -
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- technical
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- assistance
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- may
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- be
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- required,
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- download
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- may
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- require
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- supporting
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- infrastructure
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- or
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- software
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- System
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- Requirements:
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- Protégé
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- runs
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- on
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- platforms
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- that
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- support
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- JDK
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- version
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- 1.4.
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- This
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- includes
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- all
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- modern
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- versions
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- of
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- MS
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- Windows
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- (NT/2000/XP),
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- the
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- common
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- versions
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- of
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- Unix
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- including
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- Linux,
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- Solaris,
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- AIX,
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- and
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- HP-UX,
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- and
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- Mac
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- OS
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- X.
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NCI
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Protégé Presentations
| Wiki Markup |
|---|
Presentations {multi-excerpt-include:pageTitle=NCI Protege Presentations|name=NCIProtegePresentations|nopanel=true} h2. |
NCI
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Protégé Documentation
| Wiki Markup |
|---|
Documentation {multi-excerpt-include:pageTitle=NCI Protege Documentation|name=NCIProtegeDocumentation|nopanel=true} h2. |
Installation
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and
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Downloads
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The
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distribution
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package
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can
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be
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found
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The package contains the following (this may vary slightly for different versions):
- The installation folders for the client, Explanation server and Protégé server.
- A metaproject which contains accounts for editor and administrator by default.
- Test BiomedGT and NCIThesaurus OWL files to load.
- An import-repository folder containing OWL files to set up a local ontology repository.
- A ReadMe file with instructions on how to configure all the necessary scripts from scratch.
When you install a new release, you must configure a new database project, following the instructions on Protege Software Updates and Configuring New Database Project. These instructions reflect the NCI EVS server environment (directory structures, filenames, server hostnames, etc). It is not required, but it is probably easiest, to set up the same directories in a new environment.
| Info | ||
|---|---|---|
| ||
If you are an NCI editor, you will only need to download the appropriate client, from the list on the downloads page on the GForge site. |
| Wiki Markup |
|---|
|http://gforge.nci.nih.gov/frs/?group_id=174 NCI Protégé Public Release Package]. The package contains the following (this may vary slightly for different versions): * The installation folders for the client, Explanation server and Protégé server. * A metaproject which contains accounts for editor and administrator by default. * Test BiomedGT and NCIThesaurus OWL files to load. * An import-repository folder containing OWL files to set up a local ontology repository. * A ReadMe file with instructions on how to configure all the necessary scripts from scratch. When you install a new release, you must configure a new database project, following the instructions on [Protege Software Updates and Configuring New Database Project]. These instructions reflect the NCI EVS server environment (directory structures, filenames, server hostnames, etc). It is not required, but it is probably easiest, to set up the same directories in a new environment. {info:title=Download for an NCI editor}If you are an NCI editor, you will only need to download the appropriate client, from the list on the [downloads page on the GForge site|http://gforge.nci.nih.gov/frs/?group_id=174].{info} {Include:VKC:Code Download Disclaimer to Include} h2. |
NCI
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Protégé
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Forum
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and Support
| Wiki Markup |
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Support {multi-excerpt-include:pageTitle=NCI Protege Support Links|name=NCIProtegeSupportLinks|nopanel=true} h2. |
Related
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Tools
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