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Coding Scheme
RRF File Name | RRF Column Name | RRF Definition | NCI Meta only | LexGrid Model Element | Comments |
|---|---|---|---|---|---|
|
|
| NA | codingScheme.representsVersion | No comments |
|
|
| NA | codingScheme.codingSchemeName | hard coded in java file as "UMLS_SemNet" |
|
|
| NA | codingScheme.formalName | hard coded in java file as "UMLS Semantic Network" |
|
|
| NA | codingScheme.defaultLanguage | hard coded in java file as "en" |
|
|
| NA | codingScheme.approxNumConcepts | hard coded in java file as |
|
|
| NA | codingScheme.entityDescription | hard coded in java file as "The UMLS Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project. The network provides a consistent categorization of all concepts represented in the UMLS Metathesaurus." |
license.txt |
|
| NA | codingScheme.copyright | Read from license.txt file or hard coded reference in java file |
|
|
| NA | codingScheme.codingSchemeURI | hard coded in java file as "urn:lsid:nlm.nih.gov:semnet" |
...
|
|
| NA | codingScheme.relations.containerName |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"relations" | |||||
|
|
|
|
| |
|
|
| NA | codingScheme.localNameList | No comments |
|
|
| NA | codingScheme.localNameList. | hard coded in java file as "UMLS_SemNet" |
|
|
| NA | codingScheme.localNameList | No comments |
|
|
| NA | codingScheme.localNameList. | No comments |
|
|
| NA | codingScheme.source | No comments |
|
|
| NA | codingScheme.source.content | No comments |
|
|
| NA | codingScheme.localNameList | No comments |
|
|
| NA | codingScheme.localNameList. | No comments |
|
|
| NA | codingScheme.localNameList | No comments |
|
|
| NA | codingScheme.localNameList. | No comments |
|
|
| NA | codingScheme.localNameList | No comments |
|
|
| NA | codingScheme.localNameList. | No comments |
|
|
| NA | codingScheme.localNameList | No comments |
|
|
| NA | codingScheme.localNameList. | No comments |
|
|
| NA | mappings.supportedFormat | No comments |
|
|
| NA | mappings.supportedFormat.localId | hard coded in java file as "text/plain" |
|
|
| NA | mappings.supportedFormat.uri | hard coded in java file as "urn:oid:2.16.840.1.113883.6.10:text_plain" |
...
|
|
| NA | mappings.supportedAssociation |
...
No |
...
comments |
...
SRDEF | RL |
| NA | mappings.supportedAssociation.localId |
...
No |
...
comments | |||||
|
|
| NA | mappings.supportedContext | No comments |
|
|
| NA | mappings.supportedSource | No comments |
|
|
| NA | mappings.supportedSource.localId |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"NLM" |
...
|
|
| NA | mappings.supportedSource.uri |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"urn:lsid:nlm.nih.gov" |
...
|
|
| NA | mappings.supportedHierarchy |
...
No |
...
comments | ||||
|
|
| NA | mappings.supportedHierarchy.localId |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"is_a" |
...
|
|
| NA | mappings.supportedHierarchy.isForwardNavigable |
...
hard |
...
coded |
...
as |
...
"true" |
...
|
|
| NA | mappings.supportedHierarchy.rootCode |
...
hard |
...
coded |
...
as |
...
"@" |
...
|
|
| NA | mappings.supportedHierarchy.associationList |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"hasSubtype" |
...
|
|
| NA | mappings.supportedAssociationQualifier |
...
No |
...
comments |
...
SRFLD | COL |
| NA | mappings.supportedProperty | No comments |
|
|
| NA | mappings.supportedProperty.localId |
...
If |
...
SRDEF |
...
appears |
...
in |
...
the |
...
FIL |
...
column |
...
then |
...
this |
...
is |
...
treated |
...
a |
...
potential |
...
supported |
...
property |
...
and |
...
is |
...
entered |
...
in |
...
supported |
...
properties |
...
as |
...
such. | ||||
|
|
| NA | mappings.supportedProperty.uri |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"" | |||||
|
|
| NA | mappings.supportedLanguage | No comments |
|
|
| NA | mappings.supportedLanguage.localId |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"en" |
...
|
|
| NA | mappings.supportedLanguage.uri |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"urn:oid:2.16.840.1.113883.6.84:en" |
...
|
|
| NA | mappings.supportedCodingScheme |
...
No |
...
comments | ||||
|
|
| NA | mappings.supportedCodingScheme.localId |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"UMLS_SemNet" |
...
|
|
| NA | mappings.supportedCodingScheme.uri |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"urn:lsid:nlm.nih.gov:semnet" |
...
|
|
| NA | mappings.supportedRepresentationalForm |
...
No |
...
comments | |||||
|
|
| NA | mappings.supportedConceptStatus | No comments |
|
|
| NA | mappings.supportedPropertyLink | No comments |
|
|
| NA | mappings.supportedPropertyQualifier | No comments |
|
|
| NA | mappings.supportedDataType | No comments |
Entities
RRF File Name | RRF Column Name | RRF Definition | NCI Meta only | LexGrid Model Element | Comments |
|---|---|---|---|---|---|
SRDEF | UI |
| NA | Entity.entityCode | No comments |
SRDEF | STY/RL |
| NA | Entity.enitityDescription(inheritance path Entity->versionableAndDescribable) | No comments |
|
|
| NA | Entity.Property | No comments |
SRDEF | NH |
| NA | Entity.Property.text.content |
...
No |
...
comments | ||||
|
|
| NA | Entity.Property.value.text.dataType |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"text/plain" |
...
|
|
| NA | Entity.Property.propertyName |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"NH" |
...
|
|
| NA | Entity.Property.propertyId |
...
Generated |
...
value |
...
for |
...
property |
...
using |
...
"P" |
...
concatenated |
...
with |
...
a |
...
steadily |
...
incremented |
...
numerical |
...
value. | |||||
|
|
| NA | Entity.presentation | No comments |
|
|
| NA | Entity.presentation.propertyName |
...
(inherited |
...
from |
...
Property) |
...
Hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"STY/RL" |
...
or |
...
"ABR" |
...
|
|
| NA | Entity.presentation.propertyId |
...
Generated |
...
value |
...
for |
...
property |
...
using |
...
"P" |
...
concatenated |
...
with |
...
a |
...
steadily |
...
incremented |
...
numerical |
...
value. |
...
SRDEF | STY/RL, |
...
ABR |
| NA | concept.presentation.text.content |
...
No |
...
comments | ||||
|
|
| NA | Entity.presentation.value.text.dataType |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"text/plain" |
...
|
|
| NA | Entity.presentation.isPreferred |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
true. | ||||
|
|
| NA | Entity.definition.propertyName |
...
(inherited |
...
from |
...
Property) |
...
Hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"DEF" |
...
|
|
| NA | concept.definition.propertyId |
...
Generated |
...
value |
...
for |
...
property |
...
using |
...
"P" |
...
concatenated |
...
with |
...
a |
...
steadily |
...
incremented |
...
numerical |
...
value. |
...
SRDEF | DEF |
| NA | Entity.definition.text.content |
...
No |
...
comments | ||||
|
|
| NA | Entity.definition.value.text.dataType |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"text/plain" |
...
|
|
| NA | Entity.definition.isPreferred |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
true. | |||||
|
|
| NA | Entity.comment | No comments |
SRDEF | EX |
| NA | Entity.comment.propertyName |
...
(inherited |
...
from |
...
Property) |
...
Hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"EX" |
...
|
|
| NA | Entity.comment.text.content |
...
| ||||
|
|
| NA | Entity.comment.value.text.dataType |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"text/plain" |
...
|
|
| NA | Entity.comment.propertyId |
...
Generated |
...
value |
...
for |
...
property |
...
using |
...
"P" |
...
concatenated |
...
with |
...
a |
...
steadily |
...
incremented |
...
numerical |
...
value. | |||||
|
|
| NA | Entity.instruction | No comments |
|
|
| NA | Entity.instruction.propertyName |
...
(inherited |
...
from |
...
Property) |
...
Hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"UN" |
...
SRDEF | UN |
| NA | Entity.instruction.text.content |
...
No |
...
comments | ||||
|
|
| NA | Entity.instruction.value.text.dataType |
...
hard |
...
coded |
...
in |
...
java |
...
file |
...
as |
...
"text/plain" |
...
|
|
| NA | Entity.instruction.propertyId |
...
Generated |
...
value |
...
for |
...
property |
...
using |
...
"P" |
...
concatenated |
...
with |
...
a |
...
steadily |
...
incremented |
...
numerical |
...
value. |
Relations
RRF File Name | RRF Column Name | RRF Definition | NCI Meta only | LexGrid Model Element | Comments |
|---|---|---|---|---|---|
SRSTR | RL |
| NA | AssociationPredicate.associationName | In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed |
|
|
| NA | AssociationEnity.isTransitive | hard coded to true if the value of RL is "isa" |
SRSTR | RL |
| NA | AssociationEntity.forwardName | Reversed when value of RL is "isa" |
SRSTR | STY/RL |
| NA | AssociationSource.sourceEntityCode | Reversed when value of RL is "isa" |
SRSTR | STY/RL |
| NA | AssociationTarget.targetEntityCode | No comments |
SRDEF | RIN |
| NA | AssociationEntity.reverseName | No comments |
SRDEF | DEF |
| NA | AssociationEntity.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable) | When SRDEF value RT is "RL" |
SRSTRE1 | UI/STY(first argument) |
| NA | AssociationSource.sourceEntityCode | Reversed when value of RL is "isa" |
SRSTRE1 | UI/STY(2nd argument) |
| NA | AssociationTarget.targetEntityCode | Reversed when value of RL is "isa" |
| Wiki Markup |
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h2. Relations
|| _RRF File Name_ || _RRF Column Name_ || _RRF Definition_ || _NCI Meta only_ || _LexGrid Model Element_ || _Comments_ ||
| SRSTR | RL | | NA | AssociationPredicate.associationName | In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed |
| | | | NA | AssociationEnity.isTransitive | hard coded to true if the value of RL is "isa" |
| SRSTR | RL | | NA | AssociationEntity.forwardName | Reversed when value of RL is "isa" |
| SRSTR | STY/RL | | NA | AssociationSource.sourceEntityCode | Reversed when value of RL is "isa" |
| SRSTR | STY/RL | | NA | AssociationTarget.targetEntityCode | No comments \\ |
| SRDEF | RIN | | NA | AssociationEntity.reverseName | No comments \\ |
| SRDEF | DEF | | NA | AssociationEntity.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable) | When SRDEF value RT is "RL" |
| SRSTRE1 | UI/STY(first argument) | | NA | AssociationSource.sourceEntityCode | Reversed when value of RL is "isa" |
| SRSTRE1 | UI/STY(2nd argument) | | NA | AssociationTarget.targetEntityCode | Reversed when value of RL is "isa" |
\\
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