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h1. |
Question:
...
I
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deployed
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caArray
...
in
...
Eclipse
...
but
...
got
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an
...
exception
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when
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I
...
tested
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caArray.
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Why?
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Topic
...
:
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caArray
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Installation
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and
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Upgrade
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Release
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:
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Up
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to
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caArray
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2.x
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Date
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entered
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:
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04/14/2010
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Details
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about
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the
...
Question
...
I
...
deployed
...
caArray
...
in
...
Eclipse
...
and
...
tried
...
to
...
test
...
the
...
program.
...
When
...
I
...
clicked
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on
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the
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"Manage
...
array
...
design",
...
I
...
got
...
exceptions.
...
The
...
first
...
part
...
of
...
the
...
exceptions
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was
...
like
...
these:
Code Block |
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} java.lang.IllegalArgumentException: Category is null at gov.nih.nci.caarray.business.vocabulary.VocabularyServiceBean.getTerms(VocabularyServiceBean.java:134) at gov.nih.nci.caarray.business.vocabulary.VocabularyServiceBean.getTerms(VocabularyServiceBean.java:126) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at org.jboss.aop.joinpoint.MethodInvocation.invokeNext(MethodInvocation.java:112) at org.jboss.ejb3.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:166) at gov.nih.nci.caarray.application.ExceptionLoggingInterceptor.logException(ExceptionLoggingInterceptor.java:107) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at org.jboss.ejb3.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:118) ...... ...... ...... at gov.nih.nci.caarray.web.filter.CacheControlFilter.doFilter(CacheControlFilter.java:132) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at gov.nih.nci.caarray.web.filter.UpgradeFilter.doFilter(UpgradeFilter.java:121) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.jboss.web.tomcat.filters.ReplyHeaderFilter.doFilter(ReplyHeaderFilter.java:96) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) at org.jboss.web.tomcat.security.SecurityAssociationValve.invoke(SecurityAssociationValve.java:175) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:524) at org.jboss.web.tomcat.security.JaccContextValve.invoke(JaccContextValve.java:74) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) at org.jboss.web.tomcat.tc5.jca.CachedConnectionValve.invoke(CachedConnectionValve.java:156) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527) at org.apache.tomcat.util.net.MasterSlaveWorkerThread.run(MasterSlaveWorkerThread.java:112) at java.lang.Thread.run(Thread.java:595)" {code} h2. Answer This type of the exception could be caused by an empty caArray schema. The user should verify if the caArray schema has been setup properly by: # Opening the caArray database to see if the tables have been installed. # Querying a known caArray table in MySQL Client: {code} |
Answer
This type of the exception could be caused by an empty caArray schema. The user should verify if the caArray schema has been setup properly by:
- Opening the caArray database to see if the tables have been installed.
- Querying a known caArray table in MySQL Client:
Code Block SELECT * FROM category
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If
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the
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schema
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is
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indeed
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empty,
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it
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can
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be
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reinstalled
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via
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the
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steps
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below:
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- Shut
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- down
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- the
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- caArray
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- JBoss
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- server.
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- Run
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- the
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- following
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- ant
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- command
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- from
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- the
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- software/build
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- folder:
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Code Block
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ant database:reinitialize
- Restart caArray JBoss
Have a comment?
Please leave your comment in the caArray End User Forum.
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{code}
# Restart caArray JBoss
h2. Have a comment?
Please leave your comment in the [caArray End User Forum|https://cabig-kc.nci.nih.gov/Molecular/forums/viewtopic.php?f=6&t=577].
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