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Page History
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Highlights of caIntegrator v1.3.1
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released
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on
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12/2/2011
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- Compliance
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- with
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- the
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- Section
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- 508
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- of
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- the
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- US
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- Rehabilitation
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- Act.
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- Compliance
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- with
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- NCI
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- web
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- application
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- security
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- standards.
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- Support
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- for
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- Agilent
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- Human
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- Genome
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- CGH
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- Custom
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- Microarray
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- 2x415K
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- (GPL13346_family_tdt.adf)
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For
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a
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complete
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list
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of
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new
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features
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for
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1.3.1
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please
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see
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https://wiki.nci.nih.gov/display/caIntegrator/caIntegrator+Project+Pages
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.
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Highlights
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of
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caIntegrator
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v1.3
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released
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on
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06/17/2011
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- Visualization
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- capabilties
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- for
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- copyNumber
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- and
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- Expression
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- data
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- using
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- The
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- Integrative
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- Genomics
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- Viewer
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- (IGV).
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- IGV
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- is
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- high
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- performance
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- visualization
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- tool
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- for
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- interactive
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- exploration
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- of
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- large,
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- integrated
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- datasets.
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- Visualization
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- capabilties
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- for
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- copyNumber
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- using
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- NCI
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- CGWB
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- Heatmap
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- viewer.
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- Heatmap
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- viewer
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- is
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- a
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- tool
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- for
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- visualization
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- of
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- copy-number
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- data
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- and
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- associated
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- clinical
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- annotations.
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- Support
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- for
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- the
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- caCGHcall
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- grid
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- service
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- to
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- process
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- copyNumber(CGH)
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- data
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- using
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- Bioconductor
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- CGH
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- package.
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- CGHcall
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- allows
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- users
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- to
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- make
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- an
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- objective
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- and
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- effective
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- classification
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- of
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- their
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- aCGH
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- data
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- into
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- copy
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- number
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- states
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- (loss,
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- normal,
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- gain
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- or
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- amplification).
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- Querying
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- of
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- Copy
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- Number
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- data
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- by
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- Mean
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- Segment
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- Values
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- and
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- by
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- Calls
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- value
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- (Calls
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- values
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- available
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- when
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- caCGHcall
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- service
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- is
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- selected).
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- Capability
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- to
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- use
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- supplemental
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- file
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- from
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- caArray
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- for
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- all
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- supported
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- platforms.
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For
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a
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complete
...
list
...
of
...
new
...
features
...
for
...
1.3
...
please
...
see
...
...
...
...
.
Highlights of caIntegrator v1.2
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released
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on
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09/10/2010
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- Ability
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- to
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- construct
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- queries
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- from
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- GenePattern
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- GISTIC
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- results,
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- consisting
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- of
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- amplified
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- and
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- deleted
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- genes
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- Enhancement
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- to
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- copyNumber
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- data
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- processing
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- to
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- allow
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- multiple
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- platforms
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- and
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- perform
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- Bioconductor
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- caDNACopy
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- using
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- grid
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- interface
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- Support
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- queries
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- on
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- copyNumber
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- segmentation
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- data
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- -
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- combining
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- with
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- other
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- datasets
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- including
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- expression
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- and
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- clinical
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- Capability
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- to
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- integrate
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- AIM
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- (Annotation
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- Image
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- Markup)
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- data
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- from
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- the
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- grid
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- and
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- perform
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- queries
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- and
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- analysis
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- combining
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- with
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- other
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- datasets
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Please
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visit
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the
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details
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of
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this
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announcement
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at
...
...
...
...
...
...
...
...
.
Highlights of caIntegrator v1.2
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released
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on
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09/10/2010
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- Details
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- are
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- in
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- the
...
...
- features
- Please visit the details of this announcement at Release Announcement at the MATKC caIntegrator Forum
| Note |
|---|
caIntegrator2 is the name used for the early releases. |
Highlights of caIntegrator2 v1.1 released on 06/18/2010
- ability to save and use lists of genes or subjects for query and analysis.
- additional integration with caBIO including pathway search.
- enhancement to clinical data interface including easy mapping and groupings of annotations.
- ability to refer Common Data Elements (CDE) from caDSR.
- support for Agilent gene expression data.
- public browse of NCI-hosted studies without a login
- Details are in the release features
- Please visit the details of this announcement at Release Announcement at the MATKC caIntegrator2 Forum
Highlights of caIntegrator2 v1.0.1 released on 01/13/2010
- Addition of a new Visible parameter for Study Managers to select how data annotation is shown to Study Investigators.
- Study Investigators can create Lists of Genes and save them for use in Analysis workflows.
- A new capability for searching pathway data in caBio, and for creating gene lists from pathway search results.
- A new capability for searching gene symbols in caBio, and for creating gene lists from search results.
- A new capability for using multiple keywords in all caBio searches.
- Corrected links for support and contact.
- Interface to GenePattern grid-based modules now provides a link for downloading GCT and CLS files.
- Option to upgrade to newer versions of caIntegrator2 without removing existing study data and user data.
- Study Managers can now add customizable external links, which are displayed as part of the study.
- Details are in the release note
Highlights of caIntegrator2 v1.0.0 released on 11/6/2009
The first version of caIntegrator2 was released on 11/6/2009.
