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Agenda

EVS Discussion

Open System Tickets

Ticket Description Actions, Update

Tomcat 9 QA setup complete?
NCIt, NCIm.  CTS2?
EVS transition to virtual machines

STATUS:

  • Tomcat 8.5 reached EoL - needing new stacks for all tiers
    • Oracles OES8, Tomcat 9, Java 17 
      • Java 17 implemented
      • Others to follow once 17 on Pro
  • Tomcat 9 installed on QA
    • Getting issues when pointing Apache to new tomcat
    • Deployment tracks being implemented
      • check status
  • All applications giving 502 error on QA
    • check error logs
    • Invite systems to call - Eric? or team in general?
  • Tracy to send invite to systems to discuss migration in this meeting





LEXEVS UPDATES

Monthly Planning and Focus

Completed Sprint - Sprint 221 (June 07 - July 08)- 

Current Sprint  - Sprint 222(July 08 - Aug 05) - 

For the month of July 2024

Report Exporter

Report Exporter
  • Working on templating starting
    • Doing phase 1 - moved to Stage
      • Stage EVS Rest API - fixed
      • Cloud team addressing the issue
        • Held working session with systems but unsuccessful
      • Comparing tomcat 9 with tomcat 8 to find differences
      • Working on Dev and QA
    • In progress: implement file-based template storage
      • Code completed - responding to Unit tests


Security

Tomcat 8.5 is EOL - risk if new vulnerability discovered

  • Oracle Java 8 - still being used on DataQA
    • Still present on other servers, in $PATH
    • Java 17 being added next week
    • Current proposal is to not push to DataQA, let it retire
  • Need to check on Processing Server - check with Chao
  • FTP1 has .bash_history issue - file removed but recreated itself; working with Brian Gurganus
    • Deadline of one month from now to resolve.
    • Not a real .bash_history - was originally created in 2016. Zombie

Statistics Dashboard

OBJECTIVE 

  • Build scheduled report or export to document - Discovered not available on gov cloud. Will need to come up with operational procedure
    • Manish will follow up with DataDog
  • Data dropping off after 30 days. Contract adjustment being pursued that will store 45 days of data.  This will allow us to run our monthly reports without having to dive into the archive.


Comparison/Mapping Tool

Request put in for retirement - Systems working on this

Team Absences


Mayo Team -  Scott working remotely Aug 1-10, Tracy and Andrew last day Aug 30.

MSC - 

Leidos - Chao July 4-July 22nd;

            Mark Aug 16 - Aug 30 (will be planning to work and be available on: 21 or 22, 26, 27, 28; actual days will be finalized)

QA - 

Gov - 



EVS SERVICE AND ARCHITECTURE GROUP UPDATES
EVS Service and Architecture Group
  • Discussed Prod performance issues
  • See the WBS below
LexEVS Retirement


We have an initial work breakdown structure (WBS) as follows

ORGANIZATION 

  • Checklist: responsible: Mark 
  • Schedule responsible: Mark 
  • Documentation: responsible: Tracy 
  • Training and Hand-off: responsible: Mark 

COMMUNICATION 

  • Communication Plan responsible: Mark 
  • Link Migration, Redirection responsible: Tracy 
  • Banners: responsible: Scott (will be used closer to Sept) 
  • Announcements responsible: Mark (Lori, Liz) 

OPERATIONS 

  • Data Processing  responsible: Tracy -> Mark, Chao, Eric 
  • Metrics, Stats Dashboard responsible: Tracy -> Mark 
  • Resources (github, maven) responsible: Tracy 
  • Data Deployments responsible: Tracy 
  • Infrastructure , Jenkins, etc responsible: Tracy 

CODE 

  • Dependency id responsible: Scott, Tracy, Andrew 
  • Code Review responsible: Scott, Tracy, Andrew 
  • Stable Java 17 base responsible: Scott, Tracy 
  • Report Exporter responsible: Andrew -> Scott 
  • CTS2 responsible: Tracy 
  1. A detailed checklist and plan will be sent out on Friday. It use the above WBS, with additional details/actions, etc.
  2. We will have a meeting scheduled for next Tuesday (once Chao gets back to review) - will work on the detailed checklist as a group (add corrections, updates, suggestions, etc).


DATA UPDATES
Data
  • Chao out so unable to report
  • There was a prod data deployment today

BROWSER UPDATES

Browser
  •  Still issues with Stage and Prod

QA UPDATES

QA

TERMINOLOGIES LIFECYCLE REPORT

Terminology Updates and Schedule 

Mark Benson TPM Update
  • Call for people to complete their required trainings.
    • Security
    • Implicit bias





Vocabularies Slated for Production

  Terminology Updates and Schedule


Vocabulary Name

Local Name

Version

Arrival Date

Loaded to data-qa DB

Date to Stage

Date to Production

Vocabulary Name in LexBIG

Short Name

Version identifier

Date the vocabulary arrived for processing

Has the vocabulary been loaded to the data-qa database?

Approximate date the vocabulary version is scheduled to move to staging

Approximate date the vocabulary version is scheduled to move to production

NCI ThesaurusNCIt24.02d02/27/2024yes03/05/2403/09/24
NCIt-HGNCNCIt-HGNCFeb202402/27/2024yes03/05/2403/09/24
SwissProtSwissProtFeb202402/27/2024yes03/05/2403/09/24
CanMedCanMedFeb202403/09/24yes03/12/2403/17/24
ChEBIChEBIv23103/09/24yes03/12/2403/17/24
HGNCHGNCMar202403/09/24yes03/12/2403/17/24

QA Schedule and Status

see  QA Scheduling and Status



SECTION FOR FUNCTIONAL SYSTEM TESTING STATUS ::

Application and Version

Percentage Complete

Estimated Completion Date per Iteration

Priority Level 

Type Of Testing

Current Tier for Release (DEV, QA, Stage, Prod)

Expected Production Date

EVS REST API (v1.6)

100%

5/27/2022

High

Progression + Regression 

QA

6/6/2022

EVS Explore (v1.6)

100%

5/27/2022

High

Progression + Regression

QA

6/6/2022

EVS REST API(v1.6)

100%

6/1/2022

High

Regression

Stage

6/6/2022

EVS Explore(v1.6)

100%

6/2/2022

High

Regression

Stage

6/7/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/1/2022

High

Regression

Stage

6/3/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/3/2022

High

Regression

Production

6/3/2022

EVS REST API(v1.6)

100%

6/6/2022

High

Regression

Production

6/6/2022

EVS Explore(v1.6)

100%

6/7/2022

High

Regression

Production

6/7/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/6/2022

High

Regression

Production

6/8/2022

EVS REST API(22.06d) - Monthly Data Deployment

100%

6/30/2022

High

Regression

Stage , Production

6/30/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment

100%

7/8/2022

High

Smoke

Stage,Production

7/8/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment100%7/8/2022HighSmokeStage,Production7/8/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/12/2022HighSmokeStage7/12/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/13/2022HighSmokeProduction7/13/2022

EVS REST API(22.07d) - Monthly Data Deployment

100%

7/27/2022

High

Regression

Stage , Production

7/27/2022

NCIt,NCIm,TermForm(22.07d) - Monthly Data  Deployment100%8/1/2022HighSmokeStage,Production8/1/2022
NCIt,NCIm,TermForm(CanMED, GO & HGNC AUG 2022 Deployment)100%8/3/2022HighSmokeStage,Production8/3/2022

EVS REST API - 1.6.1 (Hot Fix Deployment)

100 %

8/3/2022

Highest

Progression + Regression

Stage,Production

8/4/2022


Attendees

Name

Role

Present

Remennik, LyubovNIH/NCIcheck mark button 

Safran, Tracy

NIH/NCI [C]
Ong, Kim LNIH/NCI [C]check mark button 
Lucas, Jason RNIH/NCI [C]check mark button 
Bauer, Scott  NIH/NCI [C]
Alkis, BarryNIH/NCI [C]<checked in>
Solie, ChuckNIH/NCI [C]
Kondareddy, SwathiNIH/NCI [C]check mark button
Singh, ItendraNIH/NCI [C]check mark button
Zhang, ChaoNIH/NCI [C]check mark button
Johnson, ConnieNIH/NCI [C]
Whiteman, LoriNIH/NCI [C]
Benson, MarkNIH/NCI [C]check mark button
Andrew MooreNIH/NCI [C]



JIRA Issues


Recent EVS Stats Dashboard Related Bugs and Features 

Key Summary T Created Reporter P Status
Refresh

Recent Report Exporter Related Bugs and Features 

|

Key Summary T Created Reporter P Status
Refresh

Recent LexEVS Related Bugs and Features 

Key Summary T Created Reporter P Status
Refresh

Recent CTS2 Service Related Issues 

Key Summary T Created Updated Due Assignee Reporter P Status Resolution
Refresh


ASSIGNED ACTION ITEMS

DescriptionDue dateAssigneeTask appears on
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.11
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
  • Tracy to send invite to systems to discuss migration in this meeting
LexEVS Meeting Minutes - 2024.07.17
  • Temporarily block Singapore traffic
LexEVS Meeting Minutes - 2024.06.05
  • Tracy to request shut down of instance to save resources
LexEVS Meeting Minutes - 2024.06.05
  • Temporarily block Singapore traffic
LexEVS Meeting Minutes - 2024.05.29
  • Tracy to request shut down
LexEVS Meeting Minutes - 2024.05.29
  • Check status of termform and Tomcat9
LexEVS Meeting Minutes - 2024.05.15
  • Meeting scheduled Thursday for Visual VM
LexEVS Meeting Minutes - 2024.05.15
  • Schedule followup meeting
LexEVS Meeting Minutes - 2024.04.03
  • Tracy to check with team
LexEVS Meeting Minutes - 2024.03.27
  • will need additional work to install Datadog / AWS integration. working with Cyrus and Systems.
LexEVS Meeting Minutes - 2024.02.21
  • will need additional work to install Datadog / AWS integration. working with Cyrus and Systems.
LexEVS Meeting Minutes - 2024.02.14
Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2024.02.07
  •  Short meeting to determine audience for app
LexEVS Meeting Minutes - 2024.02.07



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