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National Cancer Institute Center for Bioinformatics
NCI Protege 1.3 and patch Release Notes
09 04 2009

Product Changes

Items marked New Feature: can be found in the GForge project Feature Requests tracker group. Items marked Bug: can be found in the Bugs tracker group.  The major change in this release is the addition of "database inclusion" which enables other terminologies to be imported and "federated".  Another major change is workflow additions that enable proposals to be retrieved from the BiomedGT wiki.

  • New Features:

    caCORE:GF#12247

    Database inclusion

    1

    caCORE:GF#7518

    Visibility of 'changes' ontology

    1

    caCORE:GF#15251

    The order of items in config file is important

    1

    caCORE:GF#16191

    Export of inferred Ontology - Tweaks to output file

    1

    caCORE:GF#13842

    Incremental Round Trip from Protege to Wiki

    1

    caCORE:GF#11018

    catch client exception when server is down or being bounced

    1

    caCORE:GF#12068

    Apply the same restrictions as Protege on imported data from SMW

    1

    caCORE:GF#12935

    text is not trimmed

    1

    caCORE:GF#3537

    Synchronization of rdfs:label and Preferred_Name

    1

  • Bugs:

    caCORE:GF#8714

    Admin component of protege server goes to sleep on extended inactivity periods

    1

    caCORE:GF#3435

    Restriction INHERITED listing includes duplicate and superceded values

    1

    caCORE:GF#8745

    Removal of duplicate GO_Annotations from the Complex Properties

    1

    caCORE:GF#9298

    Prompt - accept and reject icons in 'changed by' panel of 'table' view don't work

    1

    caCORE:GF#14296

    Copy tab panes don't have header labels

    1

    caCORE:GF#14557

    Unnecessary warning dialog when saving with no semantic type set

    1

    caCORE:GF#15131

    Cancel in classification progress dialog does not terminate the classification

    1

    caCORE:GF#16400

    split tab allows creation of new roots

    1

    caCORE:GF#16076

    Transaction didn't close in a class copy operation from the Copy panel

    1

    caCORE:GF#16058

    Class Creation Problems

    1

    caCORE:GF#15788

    Save Confirmation Popup Dialog blocks other editors

    1

    caCORE:GF#14973

    class dissappears after editing(wind up under *Thing* ?)

    1

    caCORE:GF#16252

    Lengthy and incorrect transactions in EditTab

    1

    caCORE:GF#16258

    Can't retire some concepts that had referenced classes

    1

    caCORE:GF#15230

    Error when Retiring a class with existing Editor_Note or DesignNote

    1

    caCORE:GF#14056

    Permission allows delete of definition (see comments)

    1

    caCORE:GF#8682

    Merged and Retired concepts are not properly tagged with Retired_Concept

    1

    caCORE:GF#14966

    Business rule - Single restriction as N'S condition cannot be quantified by 'all'

    1

    caCORE:GF#14404

    if character in slot matches delimiter then export misaligns values

    1

    caCORE:GF#15131

    Cancel in classification progress dialog does not terminate the classification

    1

    caCORE:GF#15921

    Explanation server synchronization issue

    1

    caCORE:GF#14939

    Copy pane Preferred_Name issues after a modeling error

    1

    caCORE:GF#12066

    Different displays of attributes in top and bottom pane of workflow

    1

    caCORE:GF#15913

    Save should not be an option on the Merge panel until after a Merge or UnMerge

    1

    caCORE:GF#13712

    SMW manifestation - If source not found, may enter BioCarta

    1

    caCORE:GF#12068

    Apply the same restrictions as Protege on imported data from SMW

    1

    caCORE:GF#9455

    Editing the DEFINITION Annotation property

    1

    caCORE:GF#15247

    Failure to cross check Preferred Term in Protege 1.2.3 release

    1

    caCORE:GF#15613

    the start_explanation_server.sh script does not have appropriate commands

    1

    caCORE:GF#12131

    Inconsistant naming used in Configuration dialog

    1

    caCORE:GF#12831

    Removes/Corrupts Go_Annotation if have the exact same Long_Definition

    1

Important Remaining Issues

  • Description of the issue including special circumstances and workarounds. GF tracker number hyperlinked to the tracker. Note: Write for the intended audience.

    Indented commentary if needed (example). Continue the previous pattern for each issue.

CORE Product Dependencies

Refer to the CORE Product Dependency Matrix for the caCORE SDK and other software technologies on which this release of this product relies.

Release History

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