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LexEVS 6.2 release highlights include the addition of new content loaders that target both new standards and better sources for content. LexEVS 6.0 featured comprehensive implementation of the CTS2 draft standard for trial use, LexEVS 6.1 features a set of interfaces built on the final OMG CTS2 API specification.  Note that 6.1 does not include updates to the the Grid Services currently running on 6.0 which will be retired within 6 months of the final 6.1 release date. No 6.1 deployment of the grid services will take place.


 

Features Implemented

Project
LEXEVS-570 - Loader messaging is poor and unhelpful - RESOLVEDLexEVS
LEXEVS-590 - Need a convenience method for identifying and retrieving resolved value set coding schemes. -RESOLVEDLexEVS
LEXEVS-605 - New Script for Removing Tags - RESOLVEDLexEVS
LEXEVS-371 - Make it easy to do retrieval of only active concepts in a terminology through the/ a service - RESOLVEDLexEVS
LEXEVS-633 - Remove Struts and all dependencies from the caCORE based implementation - RESOLVEDLexEVS
LEXEVS-639 - Remove CTS2 Java API from 6.2 release - RESOLVEDLexEVS
LEXEVS-617 - Provide any needed support for CENTOS upgrade - RESOLVEDLexEVS
LEXEVS-618 - Provide support, application changes as needed for moving the LexEVS api to Tomcat from JBoss -RESOLVEDLexEVS
LEXEVS-619 - Provide application changes to support MySQL 5.5 - RESOLVEDLexEVS
LEXEVS-608 - Update LexEVS to Java 1.7 compatability - RESOLVEDLexEVS
LEXEVS-621 - Remove Security Risk form caCORE lexevsapi implemenation (Struts issue) - RESOLVEDLexEVS
LEXEVS-624 - Upgrade of the Apache Struts to release 2.3.16.1 to LexEVS 6.1 - QA VERIFIEDLexEVS
LEXEVSCTS2-1 - UI - Create an NCI CTS2 Value Set Viewer - RESOLVEDLexEVS CTS2
LEXEVSCTS2-2 - CTS2 Service - Update LexEVS CTS2 Service to the CTS2 1.1 specification as implemented in the CTS2 Development Framework - RESOLVEDLexEVS CTS2
LEXEVSCTS2-3 - CTS2 Service - Create CTS2 Value Set module - RESOLVEDLexEVS CTS2
LEXEVSCTS2-22 - Upgrade to CTS 2 1.1 framework - RESOLVEDLexEVS CTS2
LEXEVSCTS2-25 - Adjust Landing and Service pages in the LexEVS CTS2 service application - RESOLVED

LexEVS CTS2

 

Defects Fixed

LEXEVS-531 - Build scripts do not have path for dataqa - RESOLVED
LEXEVS-573 - LoadMetadata parameters not working - RESOLVED
LEXEVS-589 - LoadOWL.sh has reintroduced headless issue - RESOLVED
LEXEVS-592 - OBO Loader fails on +250 char source definition - RESOLVED
LEXEVS-594 - Resolved Value Set Definitions need to draw coding scheme name from elsewhere - RESOLVED
LEXEVS-598 - TreeService getTree method can fail when the root node code appears in multiple namespaces. - RESOLVED
LEXEVS-603 - some shell scripts have a DOS format - RESOLVED



Defects fixedIssueDescription
LEXEVS-577MedDRA_history_english.asc data are not loaded by the MedDRA (ASCII file) loaderAn addition to the new MedDRA loader that supplies history data as a property with qualifiers
LEXEVS-578Contains search using "non-small occult" as the search string against NCIt returns nothing.

Accuracy boosting of lucene special characters implemented here

LEXEVS-571Ability to drop or load multiple resolved value setsSupport of mass dropping and loading of value sets
LEXEVS-569Load times for LoadOWL take significantly longer in 6.0 
LEXEVS-527

LoadMetaBatch throws illegal character error

Accuracy boosting around special characters implementation
LEXEVS-444Trying to load NCIt to ICD9 MRMAP file, get errorSupport for missing or null elements in the MRMAP file
LEXEVS-495ICD9 GEMS map throws java.lang.NullPointerExceptionSupport for missing or null elements in the MRMAP file
LEXEVS-506Missing database index for MetathesaurusIntegration of the Metathesaurus index load to loader.
LEXEVS-514OWL loader puts property comments on every property valueCorrecting and separating content for improved readability and accuracy in the OWL loader
LEXEVS-533SNOMED Loader does not build Transitivity Table 
LEXEVS-526Metathesaurus unable to load or ResumeCorrecting data base constraints against content changes
LEXEVS-492Unable to export NCI Thesaurus 11.10e 
Features implementedIssueDescription
LEXEVS-552LexEVS Loader Enhancement - OWL2 LoaderLexEVS now loads content based on the latest OWL standard
LEXEVS-551LexEVS Loader Enhancement - MedDRA LoaderMedDRA content can now be loaded from native MedDRA ASCII files
LEXEVS-550LexEVS Performance Enhancement - Search Performance (Contains)HIgh efficiency search is implemented for a "contains" type search
LEXEVS-547LexEVS Enhancement for CTS2 - Entity Query Across Code SystemCross content search with reasonable performance is implemented
LEXEVS-546CTS2 REST MapEntryMapEntry Read and query with restrictions to code system (name of map) and either source or target code system
LEXEVS-544CTS2 REST MapCatalogEntryMapCatalog Read and query with restrictions to code system (name of map) and either source or target code system
LEXEVS-541CTS2 REST Association

Association Query with restrictions on the following:

  • Parents
  • Children
  • Restrict a source
  • Restrict a target
LEXEVS-540CTS2 REST EntityDescription

Entity Description Read and Query and features text matching with wild card, exact match, starts with and word starts with.

LEXEVS-539CTS2 REST CodeSystemVersionCatalogEntryCode System Version Read and Query with text matching on exact match, starts with, and contains.
LEXEVS-545CTS2 REST MapVersionCatalogEntry

Features Map Version Catalog Entry Read and Query with restrictions to/from code system and entity code system to/from

LEXEVS-543CTS2 REST ResolvedValueSet
Resolved Value Set Read and Query with restrictions on code system version and contained entity
LEXEVS-553LexEVS Loader Enhancement - HL7 MIF LoaderLexEVS now loads HL7 vocabularies into one coding scheme directly from the MIF files generated by each HL7 release, giving users access to more a more complete HL7 representation
LEXEVS-542CTS2 REST ValueSetDefinition

Value Set Definition Query, Read, and Resolve with restrictions on code system version and contained entity

LEXEVS-548LexEVS Performance Enhancement - Implement a persistance mechanism for resolved Value SetsThis implementation ameliorates the issue of resolving and returning large value sets by persisting value set resolutions locally
LEXEVS-549LexEVS Performance Enhancement - Performace Improvement of Hierarchy TraversalHierarchy convenience methods allow quick resolution of large shallow depth relationships.
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