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National Cancer Institute Center for Bioinformatics
Protege 1.4.1 Release Notes
28 January 2010

Product Changes

The objective of this release of Protege 1.4.1 is to provide bugs fixes found in previous Protege releases as well as completing feature request for formatting of the complex properties and improving performance for batch edits. 

New Feature Highlights


Behavior To Be Aware Of

 

List of New Features

GForge number
(hyperlinked)

Brief description of item

18997

FR - Protege tab for reasoning server administration (including status information and kb reload)

22870

FR - Would like to do 'property present' LQT queries with object properties

2948

FR - Domain and Range checks on property restrictions at edit time

23003

FR - Not able to have a NOT query in the nested query

23297

FR - Restrict access to OWLClasses tab

23516

FR - the changes ontology sees changes involving internal protege classification slots (e.g. protege:inferredSuperclassOf)

21375

FR - Use of parseType=Literal for complex properties

18533

FR - Changes Tab does not reflect items created in Batch Load

16324

FR - Need indication of classifier run

16121

FR - Button to make a concept defined

6082

FR - BACK and FORWARD Buttons


List of Bug Fixes


GForge number
(hyperlinked)

Brief description of item

24801 

Focus of editor switches while creating restrictions

22400

LQT results don't have search criteria appended at the end of the file.

22680

Restrictions added flagged as changes to Restriction classes in Prompt

24503

LQT nested query causes error dialog

24435

fitering inherited restrictions

24343

Cannot edit restriction that has an apostrophe in the filler value

18997

FR - Protege tab for reasoning server administration (including status information and kb reload)

24301

Add Individual button should only be enabled when hasValue is selected

23284

Batch edit to delete associations needs full association rdfs:ID

22870

FR - Would like to do 'property present' LQT queries with object properties

24196

Restore nci-specific export function in inferred tree widget

2948

FR - Domain and Range checks on property restrictions at edit time

19404

Link which opens when an unstructured proposal is imported, opens an xml.

20587

infinite loop in Report Writer

22969

Report Writer fails on rerun after a cancel

22984

null pointer in Protege OWL layer

23003

FR - Not able to have a NOT query in the nested query

23006

Can't change tabs unless focus is on a concept

23204

After split one of the classes ended up with owl:thing as the only parent

23276

In Copy pane, the Preferred_Name and PT are automatically sync'ed with an improper AQ.

23297

FR - Restrict access to OWLClasses tab

23431

Editing a role with Cardinality requires reselecting Cardinality

23529

Report Writer shows anon class defined by conjunction of NandS

23716

Report Writer incapable of generate completed report

23613

CompleteableCache throws a nullpointer exception

23516

FR - the changes ontology sees changes involving internal protege classification slots (e.g. protege:inferredSuperclassOf)

23057

Lucene indexing failure with database data

23631

Refresh of screen after classification slow and using up desktop resources

22879

BatchEditor gives a false positive

23530

Cannot edit the concept from workflow

23969

Batch edit takes a long time

22434

database accumulates garbage over a period of time

22405

NPE when selecting row from PROMPT differences table

21375

FR - Use of parseType=Literal for complex properties

20018

During a batch edit a new definition is accepted even without the qualifiers.

18533

FR - Changes Tab does not reflect items created in Batch Load

16324

FR - Need indication of classifier run

16121

FR - Button to make a concept defined

13586

Can the Read-Only view look like the Review pane (have one page with all class info)?

6082

FR - BACK and FORWARD Buttons

22781

Protege 1.4 loads ndf-rt with exceptions, property tab has the ugly widget

15632

Inability to reject and/or ignore suggestions from the classifier

23818

(CITRIX configuration) popup windows are inaccessible in citrix protege

23998

(duplicate of 24360 ) Runtime errors during batch edit

22786

Expands the first top level node under owl:Thing when add Restriction

23495

Slow performance when creating new concepts including split and copy

22101

Wrong Starting Point for Add/Edit Parent Class -- dup 22786

Other Items Closed

  • The defects in the following list were not reproducible, or were fixed as a by-product of refactoring, or were related to configuration setup.

GForge number
(hyperlinked)

Brief description of item

24781

Legacy_Concept_Name issues

23545

ReadCommited Cache throws a nullpointer exception.

23998

(duplicate of 24360 ) Runtime errors during batch edit

21685

Imports ontologies through the metadata tab is not working

19046

Error editing concepts from workflow with changes in ConceptType

6067

rethink and redesign workflow of pre-merge/pre-retire

18033

Make Changes tab show login and log out



CORE Product Dependencies

No caCORE dependencies. This software is used for editing and maintaining NCI Thesaurus and BiomedGT

Release History

Release

Date

1.0

Jun 07

1.1

Sept 07

1.2.0

Dec 07

1.2.1

Feb 08

1.2.2

May 08

1.2.3

Jul 08

1.2.3 Patch

Aug 08

1.3.0

Mar 09

1.4.0

Sep 09

1.4.1

Jan 10

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