- Documentation Main Page
- Creation of the Cancer Gene Index
- Data, Metadata, and Annotations
- Cancer Gene Index Gene-Disease and Gene-Compound XML Documents
- caBIO APIs
- Cancer Gene Index Shared Parsed Data and Code
- caBIO Portlet Templated Searches
- caBIO Portal
- caBIO iPhone Application
- caBIO Portlet Simple Searches
- Glossary
- Credits and Resources
To Print the Guide
We recommend you print one wiki page of the guide at a time. To do this, click the printer icon at the top right of the page; then from the browser File menu, choose Print. Printing multiple pages at one time is more complex. For instructions, refer to How do I print multiple pages?.
caBIO Portlet Simple Search Overview
caBIO is a resource that integrates biomedical data on genes, proteins, clinical protocols, disease ontologies, pharmacological agents, pathways, and other entities with annotations, controlled vocabularies, and metadata models originating from twenty-three data sources, including the Cancer Gene Index, the Pathway Interaction Database, and the University of California, Santa Cruz Distributed Annotation System. You can use the Simple Search to query these data.
Warning
It is highly recommended that you use the Cancer Gene Index Gene-Disease and Gene-Compound XML documents, caBIO Portlet Templated Search, or even the caBIO Portal instead of the caBIO Portlet Simple Search tool! Please refer to the documentation main page to decide which of these options is best for you.
Note
The caBIO Portlet Simple Search tool retrieves caBIO objects that have attributes that match a gene, disease, or compound term name; however, retrieved objects are not grouped by type and you may have to scroll through dozens of search result pages to find all Cancer Gene Index-associated objects.
Should you still want to use the Simple Search, links to guides are given below.
Step-by-step Guides
Should you wish to use this tool, step-by-step instructions are provided to help you for find